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Issues list

nanopore reads deduplication

#593 opened Jan 6, 2025 by Haper699

Adapter sequences not in overrepresented_sequences

#592 opened Dec 23, 2024 by shubham1637

Questions About Using fastp for GBS Data!!!

#591 opened Dec 23, 2024 by jeong2624

Kmers

#590 opened Dec 16, 2024 by AngieOrtizHerrera

Overrepresented sequences (polyG: GGGGG...) - No Hit Source persisted even with --trim_poly_g

#589 opened Dec 14, 2024 by denvercal1234GitHub

umi deduplication and sequence length

#587 opened Dec 7, 2024 by lisagrigoreva

Implement vectorisation to make this lib blazingly fast

#585 opened Nov 26, 2024 by chinwobble

Adapter Detection Issue with Paired-End Data in fastp Leading to Incomplete Trimming

#583 opened Oct 31, 2024 by Liping-L

merging read pair mates using a reference sequence

#582 opened Oct 30, 2024 by mmokrejs

merge paired-end reads: include average or even better median overlap length

#581 opened Oct 30, 2024 by mmokrejs

Deduplication issue: failure of one round deduplication + accuracy level issue. [fastp v0.23.4]

#580 opened Oct 3, 2024 by nightkid03

Adapter sequences not removed from short SE data

#577 opened Sep 26, 2024 by MafGal

Fastp does not remove G homopolymers

#576 opened Sep 26, 2024 by Homap

Output read lengths are affected by duplicate --adapter_sequence arguments

#575 opened Sep 20, 2024 by mwhamgenomics

What are the default settings?

#574 opened Sep 12, 2024 by jiangzy26

Ability to use FASTA files as input

#573 opened Jul 31, 2024 by vkkodali

trimming adapters at the beginning of the read and IUPAC nucleotide codes

#572 opened Jul 24, 2024 by hrehrauer

Use with fifo?

#571 opened Jul 15, 2024 by GregTD42

How can I reproduce the results of trimmomatic in fastp?

#570 opened Jul 15, 2024 by jeong2624

Feature request: output file listing the IDs of duplicate reads and associated "representative reads"

#569 opened Jul 3, 2024 by charlesfoster

How can I generate images of the same size as the insert fragment individually

#568 opened Jun 25, 2024 by Missthepast

Feature request: remove reads with poly_X tails and polyX in general

#566 opened Jun 6, 2024 by roni-fultheim

ERROR: '+' expected

#565 opened Jun 5, 2024 by spw6422

Feature Request: fastp operation on input and output directories

#564 opened May 26, 2024 by SuhasSrinivasan

Running fastp in quiet mode.

#563 opened May 26, 2024 by otradnaya

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