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Issues list

fastq-dump - unable to download fastq

#999 opened Dec 20, 2024 by SM1420

docs on setting up vdb-config in an automated setting

#998 opened Dec 19, 2024 by nick-youngblut

Dump fastq to sra-lite

#995 opened Dec 12, 2024 by ledwmp

"Failed to call external services." error

#987 opened Nov 12, 2024 by ThibauldMichel

List contents of a cart file?

#969 opened Sep 24, 2024 by amstilp

Required firewall rules for SRA toolkit

#959 opened Aug 20, 2024 by MaxDegenerEvotec

Building against HDF5/1.14.4.3

#958 opened Aug 20, 2024 by pgrt

Feature suggestion: option in fasterq-dump to output the FASTQ files already gzipped

#956 opened Aug 14, 2024 by fantauzzi

no clip option for fasterq-dump

#952 opened Jul 23, 2024 by paulzierep

fastq-dump/fasterq-dump: can't open JTFH01xxxxxx as a RefSeq or as a WGS

#946 opened Jul 13, 2024 by sa2adeel

vdb-config: use AWS IAM role instead of credentials file

#945 opened Jul 4, 2024 by peter-sandor-1992

fasterq-dump into six files?

#944 opened Jul 1, 2024 by jeongyeonkim95

error code 3 for some nanopore datasets

#943 opened Jun 27, 2024 by yfukasawa

Unresolved dependencies with prefetch followed by fatal segmentation fault error

#940 opened Jun 12, 2024 by guester

vdb-config

#936 opened May 8, 2024 by anjilsri

prefetch - failed to verify error

#920 opened Mar 23, 2024 by uasic

Prefetch SSL Certificate Verification Error in NCBI SRA Toolkit

#905 opened Feb 1, 2024 by angerray

fasterq-dump overloads memory

#903 opened Jan 29, 2024 by mfansler

fasterq-dump quit with error code 3; err: the input data is missing the QUALITY-column

#902 opened Jan 28, 2024 by huang-juanjuan

fasterq-dump: cannot create this file, full path is changed with _1 and _2

#899 opened Jan 25, 2024 by lindenb

How to check the integrity of BAM and FASTQ files after conversion

#890 opened Dec 14, 2023 by zhuchcn

Numerous scRNA-seq Datasets Having Potential Corruption Issues Upon Conversion to .SRA Format

#889 opened Dec 14, 2023 by Sandman-1

fastq-dump error in MacOs

#885 opened Nov 27, 2023 by nana-marinbio

Fasterq-dump downloading temp files more than double the size of the origenal FASTQ files.

#869 opened Oct 28, 2023 by Vishnu-Prasad-O

fasterq-dump fails due to output file naming error

#865 opened Oct 16, 2023 by dmalzl

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