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Issues list

Create JupyterLab based version of Dockerfile

#347 opened May 22, 2024 by pgleeson Release 0.9.5 of OpenWorm Stack

Possible memory leak - openworm 0.9.4

#341 opened Feb 4, 2024 by NuSynth

The first time running version 0.9.3 of this project failed.

#336 opened Nov 15, 2023 by YmShan

Output fails when running with duration higher than 2000

#332 opened Apr 25, 2023 by LucianSheen

5 tasks

Corrupted video and data.

#330 opened Nov 16, 2022 by Undertone0809

Configuration file failed with Version 0.9.3

#329 opened Oct 24, 2022 by Enderest

Docker GPU support

#320 opened Mar 13, 2022 by clausagerskov Release 0.9.5 of OpenWorm Stack

Pin versions in Dockerfile for releases

#317 opened Oct 12, 2021 by mwatts15

Use a more efficient means for recording Sibernetic simulation video

#315 opened Sep 11, 2021 by mwatts15

Use virtualenv for Docker Python packages

#314 opened Sep 7, 2021 by mwatts15

Create GSuite and GitHub account for automation

#309 opened Mar 29, 2021 by mwatts15

The openworm.org SSL certificate is valid for github.com, *.github.com, but not openworm.org. browser.openworm.org sends an empty reply over HTTPS.

#305 opened Oct 17, 2020 by AlbinoDrought

5 tasks

Incorporate ChannelWorm2 into Docker

#288 opened Sep 2, 2018 by gsarma Release 0.9.6 of OpenWorm Stack

Incorporate MyBinder.org configurations into 0.9 and get stack running on MyBinder.org

#287 opened Aug 29, 2018 by slarson Release 0.9.6 of OpenWorm Stack

Incorporate a DevoWorm related code demo into the simulation stack

#284 opened May 11, 2018 by slarson Release 0.9.5 of OpenWorm Stack

Typical delta value in PCISPH

#279 opened Apr 4, 2018 by dineshadepu

Pre-compile the c302 simulation

#273 opened Feb 12, 2018 by slarson Release 0.9.5 of OpenWorm Stack

Option to define which files to copy to the output directory

#270 opened Jan 7, 2018 by lungd Release 0.9.6 of OpenWorm Stack

Replace xvfb

#268 opened Jan 5, 2018 by lungd Release 0.9.6 of OpenWorm Stack

Plot connection matrix

#264 opened Jan 5, 2018 by lungd Release 0.9.5 of OpenWorm Stack

Enable GPU acceleration for Sibernetic running within stack

#262 opened Jan 5, 2018 by slarson Release 0.9.6 of OpenWorm Stack

Incorporate running c302 "unit tests" and "integration tests"

#259 opened Jan 5, 2018 by slarson Release 0.9.6 of OpenWorm Stack

Simplify movie output

#255 opened Jan 5, 2018 by slarson Release 0.9.5 of OpenWorm Stack

Determine Ion Channel Default Lists for Muscle Cells and Key Neurons

#245 opened Feb 14, 2017 by slarson

Produce Channel D I/V curve comparison figure

#244 opened Feb 3, 2017 by slarson Produce a multi-panel figure representing the training and simulated data produced by the model

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