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Issues: sars-cov-2-variants/lineage-proposals
Rules for proposals transfer to main page Pango repo or from ...
#1833
opened Aug 5, 2024 by
FedeGueli
Open
2
Issue to Register Singlet Recombinants that shall be not be r...
#2266
opened Dec 5, 2024 by
xz-keg
Open
11
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A quite recent Japanese Sub-lineage of KP.3.3* with S:A435S (G22865T) and other mutations, 8 seqs
KP.3.3
S:435
#2390
opened Jan 28, 2025 by
krosa1910
XEN + S:V622A (6 Samples, 5 Places, 4 Continents)
Emerged in an undersampled area
Actual infection toll may be much larger than number of sequences suggest
S:622
XEN
#2389
opened Jan 27, 2025 by
FedeGueli
MC.19+S:R765L(9 seq, 4 places)
Usher
Issues with usher related problems
#2388
opened Jan 27, 2025 by
xz-keg
MC.6 +Orf1a:K3353R with S:A435S in Ohio (8) with a singlet with further S:K558N,S:K1205T
#2387
opened Jan 27, 2025 by
FedeGueli
LF.7.3 + S:D228E ( 8 Seqs, Kenya, Canada, NY) 10% Prevalence in Kenya after Nov 15
Emerged in an undersampled area
Actual infection toll may be much larger than number of sequences suggest
High local prevalence
Lineage that apparently gained high prevalence in one country or region
LF.7
S:228
#2386
opened Jan 26, 2025 by
FedeGueli
Jn.1. + 572I underwent a mini saltation in a Cluster or a Chronic reverting S:S455L back to BA.2.86 and got S:F565L.
Likely single chronically infected patient?
Likely a chronically infected patient
ORF9b
S:455
S:565
S:572
#2385
opened Jan 26, 2025 by
FedeGueli
Another hidden lineage : JN.1.18 plus 435S and 456L and BA.2 defining N:S413S reversion appeared in Mauritius (3)
FLiRT
FLiRT is an Acronym for S:R346T + S:F456L
Lineage defining mutation mutated/reverted
S:435
#2384
opened Jan 26, 2025 by
FedeGueli
CH.1.1.8 saltation, 4 unique patients, Ireland, Dec 2024
CH.1.1
Saltation
Lineage with multiple AA/Nuc mutations
#2382
opened Jan 23, 2025 by
Sinickle
KP.3.1.1+Orf1a:H3580Y,S:A435S(17 seqs, >10 places)
KP.3.1.1
Rapid review needed
S:435
#2376
opened Jan 19, 2025 by
xz-keg
Duplicate XEC branch on usher
Usher
Issues with usher related problems
#2375
opened Jan 19, 2025 by
xz-keg
MC.10.1+S:R346T(19 seqs, 6 places)
MC.10.1
S:346
To be proposed
Green light for proposal
#2374
opened Jan 19, 2025 by
xz-keg
Possible recombinant of JN.1.67.1* +S:K478T rev and LB.1.3* (8 seqs in China, Sichuan)
DeFLiRT
S:S31/F32-+S:R346T+S:F456L
Emerged in an undersampled area
Actual infection toll may be much larger than number of sequences suggest
Rapid review needed
recombinant
S:183
S:435
S:478
S:1264
#2373
opened Jan 19, 2025 by
HynnSpylor
Another hidden lineage circulating likely in Africa during the past autumn : LF.7.3+ S:L117I + S:N487D (1, Uganda)
Emerged in an undersampled area
Actual infection toll may be much larger than number of sequences suggest
LF.7
S:487
#2372
opened Jan 18, 2025 by
FedeGueli
LF.7.3 + S:T385I (7 US, Kenya 15% prevalence after Nov 20)
Emerged in an undersampled area
Actual infection toll may be much larger than number of sequences suggest
High local prevalence
Lineage that apparently gained high prevalence in one country or region
LF.7
s:385
#2371
opened Jan 18, 2025 by
FedeGueli
KP.3.1.1+Orf1a:A2128V,P959S,V1393M+S:T572I(35 seqs, 4 places)
KP.3.1.1
S:572
#2368
opened Jan 15, 2025 by
xz-keg
KP.3.1.1+S:A1174V(21 seqs, 3 places)
KP.3.1.1
Rapid review needed
S:1174
#2366
opened Jan 15, 2025 by
xz-keg
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