bbmap

Here are 4 public repositories matching this topic...

Nextflow Alignment Pipeline

nextflow star hisat2 kallisto bwa bwa-mem bowtie bowtie2 minimap2 nucmer ngmlr bbmap subread graphmap2 novoalign bwa-sw sublong

Nextflow (nf-core) workflow for mapping reads to large collections of genomes.

nextflow metagenomics metatranscriptomics nf-core bbmap

Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow

docker bioinformatics quality-control pipeline nextflow fastq sra sra-toolkit bbmap

Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

rnaseq salmon edger snakemake-workflows tximport bbmap feature-counts

Add a description, image, and links to the bbmap topic page so that developers can more easily learn about it.

To associate your repository with the bbmap topic, visit your repo's landing page and select "manage topics."