CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).

Tutorials for the crisprVerse

A guideRNA design tool for the modern era.

GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes

This repository includes scripts for sequencing data analysis

Implementation of the paper "AcrTransAct: Pre-trained Protein Transformer Models for the Detection of Type I Anti-CRISPR Activities"

Scripts to analyze the data for the paper "An outstanding bacterial membranome requires CRISPR-Cas systems to avoid the intervention of phages" and derive the figures or subfigures shown in the manuscript.