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34 gatk-joint-variant-calling-workflow · GitHub Topics · GitHub

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gatk-joint-variant-calling-workflow

Here are 2 public repositories matching this topic...

digo4 / Clinical-Genomics

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

picard samtools bwa-mem varscan bcftools bowtie2 trimgalore cutadapt fastqc freebayes fastp gatk4 trimmomatic gatk-bestpractices gatk-joint-variant-calling-workflow gatk-cnv gatk4-haplotypecaller

Updated Jan 17, 2024
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SWEEP-Inc / GVCF

SWEEP - Joint variant calling workflow based on GATK best practices.

sweep gvcf gatk-joint-variant-calling-workflow

Updated Mar 31, 2022
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