Read and write TIFF files.
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Feb 19, 2025 - Python
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life-sciences-image
Here are 11 public repositories matching this topic...
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
java metadata image format-reader format-converter bio-formats life-sciences-image whole-slide-imaging wsi lightsheet
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Feb 21, 2025 - Java
ISA tools API
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Feb 11, 2025 - Jupyter Notebook
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
life-sciences-image gating mcd ome-tiff imc histology image-analysis-workflows tissue-classification cell-segmentation bioimage-informatics bioimaging single-cell-analysis bioimage-analysis histological-images immunofluorescence bioimage-tools imaging-mass-cytometry tissue-analysis
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Jul 11, 2023 - R
Read Carl Zeiss image files (CZI).
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Feb 19, 2025 - Python
Read Olympus image files (OIF and OIB).
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Jan 2, 2025 - Python
Read and write PicoQuant PTU and related files.
python format-reader life-sciences-image fluorescence-microscopy-imaging ptu flim picoquant tttr photon-counting fluorescence-lifetime-spectroscopy
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Feb 19, 2025 - Python
Read Becker & Hickl SDT files.
python format-reader life-sciences-image fluorescence-microscopy-imaging photon-counting fluorescence-lifetime-spectroscopy
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Dec 6, 2024 - Python
Laboratory for Fluorescence Dynamics (LFD) file formats.
python file-format format-reader life-sciences-image fluorescence-microscopy-imaging fluorescence-lifetime-spectroscopy
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Oct 25, 2024 - Python
This workshop outlines a machine-learning cell segmentation architecture from scratch for the life-sciences vertical, using Amazon SageMaker, S3, Lambda and SageMaker Inference endpoints
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Jul 18, 2023 - Jupyter Notebook
Read Leica image files (LIF, LOF, XLIF, XLCF, XLEF, and LIFEXT).
python image format-reader life-sciences-image fluorescence-microscopy-imaging flim leica fluorescence-lifetime-spectroscopy
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Feb 19, 2025 - Python
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