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@griffithlab

The Griffith Lab

Academic Lab of Obi and Malachi Griffith

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  1. regtools Public

    Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

    C++ 126 28

  2. GenVisR Public

    Genome data visualizations

    R 216 64

  3. pVACtools Public

    Python 150 63

  4. VAtools Public

    A set of tools to annotate VCF files with expression and readcount data

    Python 29 13

  5. rnabio.org Public

    website for the rnaseq course

    SCSS 97 39

  6. civic-v2 Public

    CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

    TypeScript 21 5

Repositories

Showing 10 of 74 repositories
  • civic-v2 Public

    CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

    TypeScript 21 MIT 5 69 10 Updated Feb 28, 2025
  • pVACtools Public
    Python 150 BSD-3-Clause-Clear 63 83 3 Updated Feb 26, 2025
  • griffithlab.org Public

    Griffith lab research website

    JavaScript 15 MIT 29 1 0 Updated Feb 24, 2025
  • Python 0 MIT 0 12 0 Updated Feb 24, 2025
  • Python 3 8 0 0 Updated Feb 21, 2025
  • htlv_integration_sites Public

    HTLV-1 integration site analysis notes and scripts

    R 0 MIT 0 0 0 Updated Feb 18, 2025
  • civic-docs Public

    Source code for the civicdb.org docs

    5 CC0-1.0 8 19 2 Updated Feb 13, 2025
  • pVACcompare Public
    JavaScript 0 0 0 0 Updated Jan 28, 2025
  • pVACtools_Intro_Course Public

    Getting started with pVACtools - pVACseq, pVACbind and pVACview

    CSS 0 CC-BY-4.0 2 0 1 Updated Jan 10, 2025
  • CIVIC_SVI_Course Public

    A hands on course explaining how to complete somatic cancer variant interpretation using CIViC and current guidelines

    CSS 0 CC-BY-4.0 2 0 1 Updated Jan 10, 2025

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