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49 GitHub - leospeidel/twigstats_paper: Scripts used in the Twigstats paper

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Scripts used in the twigstats paper

Simulations:

Neanderthal mixture vs deep structure
Fine-scale population structure
Admixture (f4-ratios) with and without errors
qpAdm (Harney et al)

Real data

Prepare imputed ancient DNA to run Relate
Run Relate
Run Twigstats to compute f2 statistics
Compute an MDS
Run qpAdm on Twigstats output

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Scripts used in the Twigstats paper

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