Microb. Ec01.7:343-350(1981)
MICROBI,zlLECOLOGY
Protozoan Grazing of Bacteria in Soil--lmpact and Importance
Marianne Clarholm
Department of Microbiology, Swedish University of Agricultural Sciences, S-750 07 Uppsala, Sweden
Abstract. Interactions between bacteria and protozoa in soil were studied over
2-week periods in the field and in a pot experiment. Under natural conditions the
total biological activity was temporarily synchronized by a large rainfall, and in the
laboratory by the addition of water to dried-out soil, with or without plants. In the
field, peaks in numbers and biomass of bacteria appeared after the rain, and a peak
of naked amoebae quickly followed. Of the three investigated groups--flagellates,
ciliates, and amoebae--only populations of the latter were large enough and
fluctuated in a way that indicated a role as bacterial regulators. The bacterial
increase was transient, and the amoebae alone were calculated to be able to cause
60% of the bacterial decrease. The same development of bacteria and protozoa was
observed in the pot experiment: in the presence of roots, amoebic numbers increased
20 times and became 5 times higher than in the unplanted soil. In the planted pots,
the amoebic increase was large enough to cause the whole bacterial decrease
observed; but in the unplanted soil, consumption by the amoebae caused only
one-third of the bacterial decrease.
Introduction
The role of protozoa in the soil is at present unclear [29], but evidence for their central
position is now accumulating. Calculations made by Stout and Heal [30] for an arable
field soil indicated that protozoa consumed 150-900 g of bacteria m -2 year-l, which
was equal to a production of 15-85 times standing crop. In 1973 Stout [28] suggested
that predation of bacteria by protozoa acted as an important mechanism in nutrient
release. The possible role of protozoa in nutrient cycling was later demonstrated in
microcosm experiments, where the presence of bacterial-consuming protozoa resulted in
higher mineralization [ 14] and higher nitrogen uptake by plants [ 15].
For an evaluation of the importance of protozoa in the field, the sizes and fluctuations
of their populations need to be described, especially in relation to their food source ahd
their predators. Few field data are available, however. The study of protozoa is likely to
have been hampered by their characteristics. These animals lack a proper cell wall and
are liable to burst through a change in pH or salt concentration or through mechanical
abuse. Their small size (5-30 # m) and variable shape make them difficult to recognize in
soil, where they occur in numbers 104-105 times lower than those of bacteria. This
makes direct counting impossible since the magnification needed would give only one
animal in 1 field out of 10; this leaves only indirect methods for their estimation. The
0095-3628/81/0007-0343 $01.60
(~ 1981 Springer-Vedag New York Inc.
344
M. Clarholm
small size of protozoa also makes them difficult to handle by conventional zoological
methods. At the same time, microbiologists have largely ignored these animals as falling
outside their field.
A problem in attempting to describe protozoan-bacterial relations in soil is that it is
impossible to follow the behavior of a single group of organisms. When good conditons
for biological activities prevail, cyclic growth of bacteria, protozoa, and their predators
must occur at the same time, although in different microniches separated in space. Even
a small soil sample contains many microsites, where bacterial growth alternates with
predation and death within millimeters. Under such conditions, the average observable
microbial biomass is low and constant [22], although there is a large flux through the
populations. Only conditions that strongly affect the total b~ological activity in the
soil--such as rewetting after dry conditions, or a large momentary input of energy or
nutrients-- temporarily synchronize activities in large parts of the soil. Such behavior
was demonstrated by Jensen and Ball [21] in a chemostat with natural lake water, where,
by adding sugar at 7-day intervals, they induced peaks of bacteria followed by protozoan
peaks; more frequent additions were found to disrupt the cyclic pattern.
In the field Cutler and Cramp [7] found bacterial peaks a couple of days after a rainfall,
and their observations were later conftrrned by Campbell and Biederbeck [3] and
Clarholm and Rosswall [4]. in the humus layer of a pine forest soil the latter observed a
transient bacterial increase, lasting only 4--6 days after the rainfall despite favorable
moisture conditions. The bacterial decrease could have been the result of autolysis;
however, this is not likely in view of the short time elapsing after the increase. A massive
simultaneous attack by bacteriophages is also unlikely in the heterogeneous soil
environment, as compared with an aquatic situation, where this has been shown to
occur [24]. This leaves predation as the most probable cause of the bacterial decline.
To decrease the bacterial numbers drastically in a short time requires a high grazing
pressure, which implies large numbers of active predators with high growth rates.
Protozoa meet these requirements, since they occur in great numbers in soil [10, 11],
have rapid growth rates [6, 8], and also have the ability to decrease bacterial numbers
drastically [18, 19]. Their connection with rainfall, and thus indirectly with increases of
bacteria, can be concluded from the observations made by Elliott and Coleman [ 13], who
found a peak of protozoa--of which 95% were naked amoebae--in a shortgrass prairie 7
days after irrigation.
The present study was designed to detect fluctuations in, and possible interactions
between, the bacterial and the protozoan populations in the humus soil where bacterial
fluctuation had previously been observed [4]. A series of enumerations of both groups
was therefore carried out in the field after a rainfall. Since both bacteria and protozoa
reach their highest numbers in the rhizosphere [10, 11], a pot experiment with and
without plants was set up to clarify the importance of the roots, especially as producers of
readily available energy. The experiment was run with wheat in arable soil, since it is
difficult to grow pine seedlings in humus in the laboratory [ 1]. If the bacterial decreases
observed were caused by protozoan predation, then this relationship would be found in
all kinds of rhizospheres, and maybe even more markedly in connection with an annual
plant, with only a short period of growth.
Materials and Methods
The field study was carried out through observations of bacteria and protozoa in the humus layer [78.6% loss on
ignition, 0.73% N, pH (H20) 3.5--4.0] of a 120-130-year-old stand of Scots pine (Pinus silvestris L.). The
Bacterial-Protozoan Interactions in Soil
345
stand is situated on a sandy sediment soil located at Ivantjarnsheden, central Sweden (60~
16~
site
111Va of the Swedish Coniferous Forest Project, which is more fully described in Clurholm and Rosswall t4l.
The soil profile is an iron podsol with a weakly developed bleached horizon.
Samples were taken 9 times over a 17-day period (Fig. 1). Three replicate soil cores (35.3 cm 2) were
sampled each time and processed separately. Samples for the estimations of bacteria (2.5 g fresh weight) and
protozoans (5.0 g) and for gravimetric determinations of the water content were withdrawn after mixing the
whole humus layer. Bacterial numbers and size distributions were estimated by direct microscopy in
fluorescent light after staining with acridine orange, and amounts of bacterial biomass were calculated using
the size classes described in Clarholm and Rosswall [4].
Protozoa were enumerated by a most probable number method using two-fold dilutions in microtiter plates
[ 12]. In the field observations, 1/ 10 TSB (Tryptone Soya Broth: Oxoid) in modified Neff's amoeba saline [25]
was used as dihitant, and the bacterial flora inoculated with the soil suspension grew up and served as food
Source for the protozoa.
The use of the natural microbial flora as a food source had its disadvantages, as fungi often grew in the wells
and inhibited the bacterial and protozoan growth. In the pot experiment the food source in the MPN estimations
therefore consisted of isolated soil bacteria cultivated on 1/10 TSB, centrifuged and redispersed in modified
Neff's amoeba saline. The different protozoan groups were recorded in the microtiter plates as soon as
possible, since more information is obtained if the animals are not encysted through lack of food. Ciliates were
recorded after 3 days, flagellates after 3 and 5 days, and naked amoebae after 7 and I0 days.
In the pot experiment, 300 g air-dried, milled topsoil of a sandy loam [6.6% loss on ignition, 0.25%N, pH
(H20) 6.7] from the study area of the Ecology of Arable Land project was planted with 2-day-old wheat
seedlings germinated on filter paper, 14 plants per pot. A second series, without plants, was also prepared and
treated in the same way. Seventeen days after planting, the soils were dried as much as possible without
allowing the plants to wilt. The day before the first sampling, 3 pots from each treatment were incubated
overnight in gas-tight plastic bags in a dark room, and CO 2 evolution from the whole system was measured by
gas chromatography. Neon served as volume determinant and internal standard. On day 0, all pots except the
sampled ones were watered with fresh tap water to simulate a rainfall and kept moist (~field capacity)
throughout the experimental period by additional waterings (indicated by arrows in Fig. 2). CO 2 evolution
from the pots was measured the night before they were sampled. At the times indicated in Fig. 2, bacteria,
protozoa, and water contents were determined as stated above. At sampling, the root mass from the planted
pots, with adhering soil, was lifted out of the pot, mixed, and subsampled; subsamples from the unplanted soil
were withdrawn after mixing the entire pot contents.
Results
I n t h e f i e l d s t u d y a l a r g e r a i n f a l l c a u s e d a 10-fold i n c r e a s e in b a c t e r i a l b i o m a s s w i t h a
p e a k v a l u e o f 10 m g d w g - l d w soil after 2 days (Fig. 1). T h e decrease was also dramatic,
v a l u e s h a v i n g r e v e r t e d to p r e - r a i n level 2 days after the peak. A n increase in b i o m a s s
w a s o b s e r v e d in c o n n e c t i o n w i t h a s e c o n d rain; slightly h i g h e r n u m b e r s ( n o t s h o w n )
w e r e n o t e d o n S e p t e m b e r 14, b u t n o i n c r e a s e in b i o m a s s w a s r e c o r d e d o n that o c c a s i o n .
N a k e d a m o e b a e w e r e f o u n d to be the m o s t a b u n d a n t p r o t o z o a . D u r i n g the rainfall t h e i r
n u m b e r w a s 105 i n d i v i d u a l s g - 1 d w soil, a n d 4 d a y s later t h e i r p o p u l a t i o n h a d b e c o m e 2 0
t i m e s l a r g e r (Fig. 1). T h e d e c l i n e o f the a m o e b a e was equally rapid. T h e rate o f d e c r e a s e
w a s s o m e w h a t s l o w e d d u r i n g S e p t e m b e r 1 4 - 1 5 , b u t b y S e p t e m b e r 18 the p e a k w a s o v e r .
I n n u m b e r s , f l a g e l l a t e s f o l l o w e d a p a t t e r n s i m i l a r to that o f bacteria, w i t h a large p e a k o n
S e p t e m b e r 9 a n d a s m a l l e r o n e after the s e c o n d rainfall. C i l i a t e s w e r e m u c h m o r e
i r r e g u l a r in o c c u r r e n c e ; t h e y a p p e a r e d w i t h a m e a n n u m b e r o f 1 , 3 4 0 S D 7 2 0 ( N = 14) a n d
w i t h a m a x i m u m o f 2 , 1 2 0 S D 8 6 0 ( N = 3) o n S e p t e m b e r 14, five d a y s a f t e r the b a c t e r i a l
p e a k . T h e m o i s t u r e c o n t e n t o f the h u m u s w a s o v e r 2 0 0 % o f the dry w e i g h t d u r i n g the
whole period of observation.
I n t h e p o t e x p e r i m e n t , b o t h w i t h a n d w i t h o u t p l a n t s , the h i g h e s t C O 2 e v o l u t i o n w a s
r e c o r d e d 2 d a y s a f t e r the first a d d i t i o n o f w a t e r (Fig. 2). T h e m o i s t u r e c o n t e n t w a s t h e n
346
M. Clarholrn
o10
2O
u~
10~
0
i5
5
10
15 September-7'
Standard deviation for
bacteria
amoebae
0.29
-
0.6s
5.0 0.55 1.2 2.6
0.540.53
0.21
0.0~
0.12 0.3C 0.2/~ O.5C
0.20 0.213
0.0/~
Fig. 1. Developmentof bacterial (striped) and n',tked amoebic (white) biomass in the humus layer of a
podsolized pine forest soil. The dashed line indicates a probable developmentnot registered becauseof too
infrequent sampling. Rainfalls are given in columns. Standard deviationsare given in the table below. Three
replicates were sampledat each time.
raised from suboptimal to optimal conditions. For 32-48 hr after watering, the planted
pots produced CO2 at twice the rate of days 1 and 3, while the rate increase in the
unplanted pots was only 30%. On day 0 (17 days after planting) the bacterial biomass in
the planted soil was 30% greater than in the unplanted soil. One day after watering (day
l), the biomass in the planted pots had increased by 100%, while the unplanted pots
showed a modest increase of only 20% (Fig. 2). On day 3 decreased amounts of biomass
were recorded in both treatments, and by day 5 both values were below the starting
values.
On day 0 numbers of naked amoebae were approximately l04 g - l dw in both
treatments and stayed at that level throughout.day 3, but drastic increases were recorded
on day 5 (Fig. 2). In the unplanted series, amoebic numbers increased six-fold over the
initial estimates, and in the planted series the increase was 30-fold. These high numbers
were transient; 2 days later the numbers had decreased to three times the initial value in
the planted soil, and to twice the initial value in the unplanted pots.
The largest number of bacterial-feeding flagellates, 14,470 SD 4, 770 g - i dw (N=3),
was recorded on day 3 in the planted pots. There were no drastic changes over the period,
and the mean value was 8, 910 SD 7, 390 (N= 18). The corresponding values for the
unplanted pots were 8,460 SD 2,760 (N=3) and 5,250 SD 3,520 (N= 18).
Bacterial-Protozoan Interactions in Soil
347
0.8
O?
o
0.6
"6
7t ~
3
-o 0.4
E
0.3
E
o
m
0.2
0.1
0
1
2
3
5
7
WITH PLANTS
C02evotution pl. pot-lh-lJ950 800 161018?0 I
X-+ sd
~120 • •177
10
670
-+O187001
*-70
16 days
480
+40
.....
550]
_-203
Standard deviation for
bacteria
0.05 0.0~ nd 0.19
0.01
0.02,
nd
0.02
amoebae x10
0.15 0.3( nd 0.40
4.3!
1.04~]
nd
0.02
WITHOUT PLANTS
C02evolution Wt pot-lh-1 350 360 L90}3501
~--'-sd
1-%o1•
t4o I
320
-•
350]
-+50[
150
+-20
1200
I-+3o
J
Standard deviation for
bacteria
0.070.0; nd 0.0t.
0.07
0.01
nd
0.02
amoebae x l 0
0.17 -
3.50
0.3C
nd
0.10
nd 3.36
Fig. 2. Development of bacterial (striped with plants; checked, without plants) and naked amoebic (white,
with plants; dotted, without plants) biomass in a pot experiment with an arable soil with and without wheat
plants. Watering is indicated by arrows. The dashed lines indicate probable developments not registered
because of too infrequent samplings. CO 2 evolution rate the night prior to sampling and standard deviation for
the biomass estimates are given in the tables below. Three replicates were sampled at each time.
348
M. Clarholm
Ciliates were recorded at every sampling in the soils with plants; the peak value was
obtained on day 3, with 260 SD 130 (N= 18). In the unplanted soils, ciliates rarely reached
detection level (m50 g - l dw).
Discussion
The numbers of protozoa recorded in the arable soil used in the pot experiment were, for
all groups, in good agreement with those reported by Darbyshire and Greaves [10, 11]
for arable soil, and by Elliott and Coleman [ 13] for fertilized and irrigated grassland soil.
For the forest soil, no comparable quantitative estimates have been found. The numbers
of protozoa per unit of soil weight were almost 10 times higher in the humus than in the
arable soil, but if the comparison was made on an areal basis, the values were of the same
order of magnitude. The large dominance of naked amoebae in terrestrial systems as
compared with aquatic ones [ 16, 29] may be explained by some of their properties in
which they differ from the other groups of protozoans. Their sliding motion on surfaces
enable them to feed on the soil particles, where most of the bacteria grow [20], and their
highly flexible cells are well adapted for grazing activities within the thin water films
surrounding the soil particles.
The only group of protozoa that increased their numbers enough to decrease the
bacteria were the amoeba. For a quantitative estimate of their impact, the increase in
amoebic biomass must be calculated. The naked amoebae are a heterogeneous group;
with many species; and depending on the nutrient situation, even the same species can
vary in size at the time of division [6, 8]. For two typical soil amoebae, Hartmannella
and Achanthamoeba, 0.8 x 10 -9 g dw [2] and 1.2 x 10 - 9 g dw [5] per animal,
respectively, have been reported; and 1.0 • 10-9 g dw, together with a 40% growth
efficieny [5], was used in the present calcualtions. In the forest, 4.6 mg dw of bacteria
would then be needed to produce the increase of 18.3 x 105 naked amoebae recorded,
and this should be compared with an observed bacterial decrease of 8.0 mg. In the pots
with plants in arable soil, 0.53 mg would have been consumed, and the recorded
decrease was 0.50 mg. In the unplanted pots, the bacterial decrease was 0.45 mg, and
0.14 mg was needed to account for the observed increase in protozoans. The
comparatively low bacterial peak values recorded in this experiment were most probably
due to missed recordings on day 2, since a high production could be inferred from the
CO 2 evolution rate (Fig. 2).
No large peaks of either bacteria or protozoa could be observed later in the pot
experiment because in a continuously wet soil grazing takes place simultaneously at all
levels; bacteria are eaten by protozoa, which are eaten by, e.g., nematodes as soon as
they are produced. This is also why the secoiid bacterial peak observed in the field is
smaller and the protozoan peak can be seen only as a delay in the decrease. Low amounts
of bacterial biomass were found in the planted pots on day 3, before the amoebic biomass
increase was registered. The fact that the biomass was calculated from numbers and
based on average size--without taking into account any increase of the cell before the
division--may, at least partially, explain this discrepancy.
Grazing by flagellates is probably of less importance for the bacterial decrease, since
many species are saprozoic, using dissolyed nutrients. Umorin [31] estimated the
consumption by bacterial-feeding soil flagellates to be only 0.2% of the bacterial
production. Ciliates, which are filter feeders, have a high capacity for ingesting bacteria
Bacterial-Protozoan Interactions in Soil
349
in water [9], but in soil their larger size restricts their active feeding to periods with a very
high water content, which probably diminishes their overall importance, Bacterialfeeding nematodes at the forest site have been calculated to consume 2.1 g C m -2 year- t
[26], which is only 2% of the bacterial production [4]. Also, their generation times are
generally too long to permit a rapid increase in the grazing pressure.
Naked amoebae thus stand out as the largest single group of bacterial consumers in the
soils investigated, and a substantial part of the observed decreases in bacterial numbers
following peaks induced by increases in moisture seem to have been caused by their
grazing, The calculated grazing impact is a minimum figure, since the number of
amoebae killed in the soil preparations preceding the MPN determinations is not known.
Previous work also supports their large grazing capacity. After direct observation of the
surface of a wheat root, Geltzer [ 17] reported: "In the immediate vicinity of roots and on
their very surface a large number of amoebae appeared. They multiplied readily,
exterminating nearly all the bacteria in a short time."
To understand the importance of protozoan grazing, one must see the feeding
activities of these animals in relation to the rest of the ecosystem. In unfertilized soils,
inorganic nitrogen levels are always low, and the nitrogen for plant uptake must be
released through decomposition of dead organic matter by microorganisms. In the
rhizospere, where normal energy limitations of bacteria in root-free soil [27] are
temporarily lifted by the production of readily available carbon by the roots, nitrogen is
the most limiting nutrient for bacterial growth. Most of the nitrogen released by
decomposition in the rhizosphere is therefore f'trst incorporated into microbial biomass.
At the same time the most important factor governing protozoan growth is an ample food
supply [23]. An increase in bacteria therefore leads to an increase in protozoa.
Protozoans and bacteria have about the same nitrogen content, and consequently 60% of
the bacterial nitrogen is excreted by the protozoans as ammonia close to the roots. Their
grazing thus speeds up the release to the water phase of nitrogen and other inorganic
nutrients from the bacterial ceils.
Acknowledgements. The author wishes to thank T. Lindberg and T. Rosswall for helpful discussions and
constructive criticism. This project was carded out in part within the Swedish Coniferous Forest Project,
supported by grants from the Swedish Natural Science Research Council, and in part within the Ecology of
Arable Land project, which in addition was supported by the Swedish Council for Planning and Coordination
of Research, the Swedish Council for Agricultural and Forestry Research, and the Swedish Environment
Protection Board.
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