RSVSim

This is the released version of RSVSim; for the devel version, see RSVSim.

RSVSim: an R/Bioconductor package for the simulation of structural variations

Bioconductor version: Release (3.20)

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>

Citation (from within R, enter citation("RSVSim")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RSVSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RSVSim")

RSVSim: an R/Bioconductor package for the simulation of structural variations	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Sequencing, Software
Version	1.46.0
In Bioconductor since	BioC 2.12 (R-3.0) (11.5 years)
License	LGPL-3
Depends	R (>= 3.5.0), Biostrings, GenomicRanges
Imports	methods, IRanges, ShortRead
System Requirements
URL

Suggests	BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, MASS, rtracklayer, pwalign
Linking To
Enhances
Depends On Me
Imports Me
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RSVSim_1.46.0.tar.gz
Windows Binary (x86_64)	RSVSim_1.46.0.zip (64-bit only)
macOS Binary (x86_64)	RSVSim_1.46.0.tgz
macOS Binary (arm64)	RSVSim_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RSVSim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RSVSim
Bioc Package Browser	https://code.bioconductor.org/browse/RSVSim/
Package Short Url	https://bioconductor.org/packages/RSVSim/
Package Downloads Report	Download Stats

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