org.Hs.eg.db

This is the released version of org.Hs.eg.db; for the devel version, see org.Hs.eg.db.

Genome wide annotation for Human

Bioconductor version: Release (3.20)

Genome wide annotation for Human, primarily based on mapping using Entrez Gene identifiers.

Author: Marc Carlson

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("org.Hs.eg.db")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("org.Hs.eg.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData, Homo_sapiens, OrgDb, humanLLMappings
Version	3.20.0
License	Artistic-2.0
Depends	R (>= 2.7.0), methods, AnnotationDbi(>= 1.67.0)
Imports
System Requirements
URL

Suggests	DBI, annotate, RUnit
Linking To
Enhances
Depends On Me	CoCiteStats, GSReg, KEGGlincs, signatureSearch, tRanslatome, clariomdhumanprobeset.db, clariomdhumantranscriptcluster.db, clariomshumanhttranscriptcluster.db, clariomshumantranscriptcluster.db, FDb.InfiniumMethylation.hg18, FDb.InfiniumMethylation.hg19, GGHumanMethCancerPanelv1.db, h10kcod.db, h20kcod.db, hcg110.db, hgfocus.db, hgu133a.db, hgu133a2.db, hgu133b.db, hgu133plus2.db, hgu219.db, hgu95a.db, hgu95av2.db, hgu95b.db, hgu95c.db, hgu95d.db, hgu95e.db, hguatlas13k.db, hgubeta7.db, hguDKFZ31.db, hgug4100a.db, hgug4101a.db, hgug4110b.db, hgug4111a.db, hgug4112a.db, hgug4845a.db, hguqiagenv3.db, hi16cod.db, Homo.sapiens, hs25kresogen.db, Hs6UG171.db, HsAgilentDesign026652.db, hta20probeset.db, hta20transcriptcluster.db, hthgu133a.db, hthgu133b.db, hthgu133plusa.db, hthgu133plusb.db, hthgu133pluspm.db, hu35ksuba.db, hu35ksubb.db, hu35ksubc.db, hu35ksubd.db, hu6800.db, huex10stprobeset.db, huex10sttranscriptcluster.db, hugene10stprobeset.db, hugene10sttranscriptcluster.db, hugene11stprobeset.db, hugene11sttranscriptcluster.db, hugene20stprobeset.db, hugene20sttranscriptcluster.db, hugene21stprobeset.db, hugene21sttranscriptcluster.db, HuO22.db, hwgcod.db, IlluminaHumanMethylation27k.db, illuminaHumanv1.db, illuminaHumanv2.db, illuminaHumanv2BeadID.db, illuminaHumanv3.db, illuminaHumanv4.db, illuminaHumanWGDASLv3.db, illuminaHumanWGDASLv4.db, JazaeriMetaData.db, LAPOINTE.db, lumiHumanAll.db, Norway981.db, nugohs1a520180.db, OperonHumanV3.db, PartheenMetaData.db, pedbarrayv10.db, pedbarrayv9.db, POCRCannotation.db, Roberts2005Annotation.db, SHDZ.db, u133x3p.db, annotation, rnaseqGene, variants, OSCA.workflows
Imports Me	APL, artMS, attract, bioCancer, BioNAR, CaMutQC, CBNplot, cellity, chimeraviz, chipenrich, consensusDE, consICA, CoSIA, dce, debrowser, DegCre, EasyCellType, EGSEA, famat, funOmics, GDCRNATools, geneAttribution, gINTomics, GmicR, GOpro, goSorensen, mastR, MCbiclust, MetaboSignal, methylGSA, mirIntegrator, miRLAB, miRSM, miRspongeR, missMethyl, Moonlight2R, MOSClip, mslp, netZooR, OutSplice, PanomiR, pathview, REMP, rGREAT, rgsepd, RNAAgeCalc, rTRMui, scPipe, SGCP, SMITE, sSNAPPY, SubCellBarCode, SVMDO, TFEA.ChIP, TFutils, UMI4Cats, uncoverappLib, GenomicState, SomaScan.db, msigdb, recountWorkflow, SingscoreAMLMutations, aliases2entrez, BiSEp, CAMML, convertid, DIscBIO, driveR, g3viz, ICDS, immcp, jetset, netgsa, oncoPredict, PANACEA, pathfindR, PMAPscore, prioGene, ProFAST, RVA, ssdGSA
Suggests Me	AllelicImbalance, annotate, AnnotationDbi, AnnotationFilter, AnnotationForge, annotatr, appreci8R, ASURAT, autonomics, BioCor, BiocSet, BioQC, borealis, bumphunter, categoryCompare, CeTF, ChIPpeakAnno, ChIPseeker, CINdex, clusterProfiler, cnvGSA, CNVRanger, CRISPRseek, derfinderPlot, dmrseq, DOSE, edgeR, EnhancedVolcano, enhancerHomologSearch, EnrichDO, enrichplot, EpiCompare, EpiMix, esATAC, FELLA, fishpond, FRASER, GA4GHclient, GA4GHshiny, gage, gCrisprTools, GeDi, GeneNetworkBuilder, GeneTonic, geneXtendeR, GenomicFeatures, GenomicInteractionNodes, geomeTriD, GeoTcgaData, gg4way, globaltest, gmapR, goProfiles, GOSemSim, goseq, GOstats, GRaNIE, graphite, groHMM, GSAR, GSEABase, GSVA, GUIDEseq, gwascat, hpar, ideal, iNETgrate, InteractiveComplexHeatmap, iSEEde, iSEEpathways, iSEEu, karyoploteR, KEGGgraph, limma, MesKit, MIRit, miRNAtap, MLP, mogsa, mosdef, multiGSEA, NanoMethViz, NetActivity, NetSAM, ontoProc, oppar, Organism.dplyr, OUTRIDER, pageRank, pathlinkR, pcaExplorer, PCAtools, phantasus, Pigengene, plotgardener, ProteoDisco, PureCN, quantiseqr, R3CPET, ramr, ReactomePA, recount, RnBeads, rrvgo, RTopper, rtracklayer, rTRM, scde, scFeatures, scGPS, scmeth, SigFuge, simona, SingleCellAlleleExperiment, spatialHeatmap, TCGAutils, tenXplore, tidybulk, trackViewer, tricycle, Ularcirc, VariantFiltering, VariantTools, vissE, wiggleplotr, BloodCancerMultiOmics2017, chipenrich.data, prostateCancerTaylor, RforProteomics, ExpHunterSuite, aPEAR, BaseSet, bulkAnalyseR, conos, easylabel, GeneSelectR, goat, kernscr, MARVEL, Mega2R, metaMA, MOCHA, pagoda2, protr, RCPA, rliger, SCpubr, SNPassoc, WGCNA
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	org.Hs.eg.db_3.20.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/org.Hs.eg.db/
Package Downloads Report	Download Stats

Menu