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@griffithlab

The Griffith Lab

Academic Lab of Obi and Malachi Griffith

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  1. regtools regtools Public

    Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

    C++ 124 27

  2. GenVisR GenVisR Public

    Genome data visualizations

    R 214 63

  3. pVACtools pVACtools Public

    R 148 63

  4. VAtools VAtools Public

    A set of tools to annotate VCF files with expression and readcount data

    Python 28 13

  5. rnabio.org rnabio.org Public

    website for the rnaseq course

    SCSS 95 38

  6. civic-v2 civic-v2 Public

    CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

    TypeScript 21 5

Repositories

Showing 10 of 74 repositories
  • civic-v2 Public

    CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

    griffithlab/civic-v2’s past year of commit activity
    TypeScript 21 MIT 5 67 9 Updated Jan 30, 2025
  • civic-docs Public

    Source code for the civicdb.org docs

    griffithlab/civic-docs’s past year of commit activity
    5 CC0-1.0 8 19 1 Updated Jan 30, 2025
  • pVACtools Public
    griffithlab/pVACtools’s past year of commit activity
    R 148 BSD-3-Clause-Clear 63 78 4 Updated Jan 30, 2025
  • griffithlab/neoag_vaccine_scripts’s past year of commit activity
    Python 0 0 12 0 Updated Jan 29, 2025
  • htlv_integration_sites Public

    HTLV-1 integration site analysis notes and scripts

    griffithlab/htlv_integration_sites’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 28, 2025
  • pVACcompare Public
    griffithlab/pVACcompare’s past year of commit activity
    JavaScript 0 0 0 0 Updated Jan 28, 2025
  • griffithlab/docker-pvactools’s past year of commit activity
    Python 3 7 0 0 Updated Jan 17, 2025
  • pVACtools_Intro_Course Public

    Getting started with pVACtools - pVACseq, pVACbind and pVACview

    griffithlab/pVACtools_Intro_Course’s past year of commit activity
    CSS 0 CC-BY-4.0 2 0 1 Updated Jan 10, 2025
  • CIVIC_SVI_Course Public

    A hands on course explaining how to complete somatic cancer variant interpretation using CIViC and current guidelines

    griffithlab/CIVIC_SVI_Course’s past year of commit activity
    CSS 0 CC-BY-4.0 2 0 1 Updated Jan 10, 2025
  • civicpy Public

    A python interface for the CIViC db application

    griffithlab/civicpy’s past year of commit activity
    Python 11 MIT 6 15 13 Updated Dec 19, 2024

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