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@pughlab

Pugh Lab

The Pugh Laboratory at the Princess Margaret Cancer Centre

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  1. PughLabReadme PughLabReadme Public

    Documentation of best practices, coding tips, and ongoing projects developed by the Pugh Lab.

    2

  2. cbioportal cbioportal Public

    Forked from cBioPortal/cbioportal

    cBioPortal for Cancer Genomics

    Java 2

  3. ConsensusCruncher ConsensusCruncher Public

    ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a cons…

    Jupyter Notebook 21 10

  4. VisCap VisCap Public

    VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data.…

    R 22 12

  5. bamgineer bamgineer Public

    Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

    Python 37 14

  6. crescent crescent Public

    The CanceR Single Cell ExpressioN Toolkit one-line-command applications.

    R 8 4

Repositories

Showing 10 of 112 repositories
  • IOKIN_TCR-and-ctDNA Public
    pughlab/IOKIN_TCR-and-ctDNA’s past year of commit activity
    R 0 0 0 0 Updated Mar 16, 2025
  • matchminer-api Public Forked from dfci/matchminer-api

    A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials

    pughlab/matchminer-api’s past year of commit activity
    Python 0 13 0 1 Updated Mar 14, 2025
  • oncographer Public

    OncoGrapher: standardized, graph-based, clinical data abstraction tool leveraging the MOHCCN data standard

    pughlab/oncographer’s past year of commit activity
    TypeScript 5 1 0 0 Updated Mar 12, 2025
  • tigerdb Public

    TIGERdb: T-Cell and ImmunoGlobulin Epitope Receptor DataBase

    pughlab/tigerdb’s past year of commit activity
    TypeScript 1 0 0 1 Updated Mar 12, 2025
  • ctims-matchminer-engine Public
    pughlab/ctims-matchminer-engine’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Mar 10, 2025
  • ctims Public

    CTIMS project

    pughlab/ctims’s past year of commit activity
    CSS 2 Apache-2.0 10 8 3 Updated Mar 10, 2025
  • COMBAT Public
    pughlab/COMBAT’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 14, 2025
  • MetaMutationalSigs Public Forked from PalashPandey/MetaMutationalSigs

    https://hub.docker.com/r/pp535/metamutationalsigs

    pughlab/MetaMutationalSigs’s past year of commit activity
    HTML 0 2 0 0 Updated Feb 10, 2025
  • hbc Public
    pughlab/hbc’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 3, 2025
  • IRIS_TCR Public
    pughlab/IRIS_TCR’s past year of commit activity
    R 0 0 0 0 Updated Jan 29, 2025
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