Name		Name	Last commit message	Last commit date
parent directory ..
data		data
README.md		README.md
make_mixing_plot.R		make_mixing_plot.R
test_cli.py		test_cli.py

README.md

Sample genotyping

maegatk bcall -i data/test_maester.bam -o test_maester -z

compare to mgatk

mgatk  bcall -i data/test_maester.bam -o test_mgatk -ub UB -bt CB -g rCRS --NHmax 2 --NMmax 15 -z

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