Table 3.
Features unique to WebGestalt or shared with other toolsa
 |
 |
 |
 |
|
|---|---|---|---|---|
| Multiple-organism support | ✓ | ✓ | ✓ | ✓ |
| Gene identifier | ||||
| Public database | ✓ | ✓ | ✓ | ✓ |
| Affymetrix | ✓ | ✓ | ✓ | ✓ |
| Agilent | ✓ | ✓ | ✓ | ✓ |
| Codelink | ✓ | ✓ | ✓ | |
| SNP | ✓ | ✓ | ✓ | |
| Functional category | ||||
| GO | ✓ | ✓ | ✓ | ✓ |
| KEGG | ✓ | ✓ | ✓ | ✓ |
| Pathway Commons | ✓ | Lb | L | L |
| WikiPathways | ✓ | |||
| Hierarchical protein interaction network module | ✓ | |||
| MicroRNA target | ✓ | ✓ | ||
| Transcription factor target | ✓ | ✓ | ✓ | |
| Phenotype | ✓ | L | ||
| Disease | ✓ | ✓ | ||
| Drug | ✓ | |||
| Cytogenetic band | ✓ | ✓ | ||
| Visualization | ||||
| GO DAG | ✓ | ✓ | ✓ | ✓ |
| KEGG visualization | ✓ | ✓ | ✓ | ✓ |
| WikiPathways visualization | ✓ | |||
| Network DAG and node-link diagram | ✓ | |||
| Phenotype DAG | ✓ | |||
aThe purpose of this table is to distinguish which WebGestalt features are unique to WebGestalt and which of them are available in other tools. Thus, the table only lists features available in WebGestalt. This is not meant to be a comprehensive comparison of enrichment analysis tools, and only three other representative tools are included.
bDAVID and FatiGO contain Reactome and Biocarta databases whereas g:Profiler contains Reactome and BIOGRID databases. These databases are a subset of the Pathway Commons database; g:Profiler only contains phenotypes from Human Phenotype Ontology.