Mycology Notes
Mycology Notes
Mycology Notes
Mycology
(Guide Notes)
Medically Significant
Fungi
A.
B.
C.
D.
General Characteristics
Taxonomy
Agents of Mycoses
Laboratory Diagnosis
A. General
Characteristics
1. Yeasts and Molds
2. Hyaline versus Dematiaceous
3. Dimorphism and
Polymorphism
4. Reproduction
A. General
Characteristics
1. Yeasts and Molds
A. Yeast
Multicellular
Woolly (Fuzzy) appearance in culture
A. General
Characteristics
1. Yeasts and Molds
B. Molds
Made up of Mycelium
i. Mycelium
Intertwining structures
composed of hyphae
ii. Hyphae
Tubelike structures
Fundamental units of fungi
A. General
Characteristics
1. Yeasts and Molds
B. Molds
Parts of Hyphae
i. Aerial (reproductive)
A. General
Characteristics
1. Yeasts and Molds
B. Molds
Types of Hyphae
i. Septate
With frequent
crosswalls
Aseptate
Few cross walls
A. General
Characteristics
1. Yeasts and Molds
B. Molds
A. General
Characteristics
1. Yeasts and Molds
B. Molds
Structures associated to
hyphae
iii. Phialide / Annellide
A. General
Characteristics
1. Yeasts and Molds
B. Molds
Coiled hyphae
T. Mentagrophytes
A. General
Characteristics
1. Yeasts and Molds
B. Molds
Club shaped
E. floccosum
Broken comb
M. audouinii
A. General
Characteristics
1. Yeasts and Molds
B. Molds
Antler hyphae
T. schoenleinii
T. violaceum
A. General
Characteristics
2. Hyaline versus Dematiaceous
hyphae
A. Hyaline (Moniliaceous)
A. General
Characteristics
3. Dimorphism and Polymorphism
A. Dimorphism (Dimorphic Fungi)
Fungi)
Have both yeast and mold
forms in the same culture
A. General
Characteristics
4. Reproduction
A. Asexual
Forms conidia from hyphae of 1
organism
B. Sexual
Forms spores by merging of cell and
nuclei
A. General
Characteristics
4. Reproduction
A. Asexual
Results in the formation of conidia
i. Conidia
ii. Macroconidia
large and multicelled
iii. Microconidia
A. General
Characteristics
4. Reproduction
A. Asexual
Spores develop from vegetative mycelium
iv. Blastoconidia (blastospores)
A. General
Characteristics
4. Reproduction
A. Asexual
Spores develop from vegetative mycelium
v. Chlamydoconidia (chlamydospores)
Sessile (sides)
Intercalary (within)
P. brasiliensis, C. albicans
A. General
Characteristics
4. Reproduction
A. Asexual
Spores develop from vegetative
mycelium
vi. Arthroconidia (arthrospores)
A. General
Characteristics
4. Reproduction
A. Asexual
Spores contained in sacs
(sporangium)
vii.Sporangiospores
A. General
Characteristics
4. Reproduction
B. Sexual
Merging of cells and nuclei of
two cells
Types of specialized spores
i. Ascospores
ii. Zygospores
iii. Basidiospore
iv. Oospore
A. General
Characteristics
4. Reproduction
B. Sexual
i. Ascospores (Sac Fungi)
A. General
Characteristics
4. Reproduction
B. Sexual
iii. Basidiospores (Club Fungi)
Spores produced on a
basidium
Septate hyphae
iv. Oospore
A. General
Characteristics
4. Reproduction
Phases of Reproduction
i. Teleomorph
Reproduce sexually
ii. Anamorph
iii. Synanamorphs
Outline
A.
B.
C.
D.
E.
General Characteristics
Taxonomy
Agents of Mycoses
Laboratory Diagnosis
Antifungal Susceptibility
B. Taxonomy
1. Zygomycota
(Glomerulomycota)
Aseptate
Presence of Sporangium
Mucor, Rhizopus and Absidia
2. Ascomycota
Septate
Presence of Ascospores
Microsporum, Trichophyton and P.
boydii
B. Taxonomy
3. Basidiomycota
Septate w/ clamp connections
Presence of Basidiospores
Filobasidiella neoformans
4. Deuteromycota
Fungi Imperfecti
No mode of sexual reproduction
Largest number of species
Outline
A.
B.
C.
D.
E.
General Characteristics
Taxonomy
Agents of Mycoses
Laboratory Diagnosis
Antifungal Susceptibility
Outline
A.
B.
C.
D.
E.
General Characteristics
Taxonomy
Agents of Mycoses
Laboratory Diagnosis
Antifungal Susceptibility
C. Agents of Mycoses
1. Superficial Mycoses
2. Cutaneous Mycoses
3. Subcutaneous Mycoses
4. Systemic Mycoses
5. Opportunistic Mycoses
6. Yeast & Yeast-like
C. Agents of Mycoses
1. Superficial Mycoses
A. General Characteristics
B. Clinical Manifestations and Lab
Diagnosis
C. Agents of Mycoses
1. Superficial Mycoses
A. General Characteristics
Affects the outermost
layer (stratum
corneum)
of
the skin or hair
C. Agents of Mycoses
1. Superficial Mycoses
A. General Characteristics
B. Clinical Manifestations and Lab
Diagnosis
C. Agents of Mycoses
1. Superficial Mycoses
B. Clinical Manifestations and Lab
Diagnosis
i. Malassezia furfur
a. Clinical Manifestations
Tinea versicolor (pityriasis
versicolor)
Pale or fawn patches in skin
b. Laboratory Diagnosis
Cluster of Budding yeasts w/ hyphae
Spaghetti and meatballs
C. Agents of Mycoses
1. Superficial Mycoses
B. Clinical Manifestations and Lab
Diagnosis
ii. Hortaea werneckii
a. Clinical Manifestations
Tinea nigra
brown to black macules in palms
& soles
b. Laboratory Diagnosis
Dark 1-2 (budding) cell
C. Agents of Mycoses
1. Superficial Mycoses
B. Clinical Manifestations and Lab
Diagnosis
iii.Piedraia hortae
a. Clinical Manifestations
Black Piedra
Brown to black crusts / nodules on
hair
b. Laboratory Diagnosis
Dark hyphae with swelling (ascus)
C. Agents of Mycoses
1. Superficial Mycoses
B. Clinical Manifestations and Lab
Diagnosis
iv. Trichosporon beigelii complex
a. Clinical Manifestations
White piedra
Dark hyphae with swelling
(ascus)
b. Laboratory Diagnosis
Hyaline hyphae
C. Agents of Mycoses
1. Superficial Mycoses
2. Cutaneous Mycoses
3. Subcutaneous Mycoses
4. Systemic Mycoses
C. Agents of Mycoses
2. Cutaneous Mycoses
A. General Characteristics
Agents of
dermatophytoses
Keratinophilic
(hair, nails and skin)
Asexual reproductive cells
i. Macroconidium
ii. Microconidium
C. Agents of Mycoses
2. Cutaneous Mycoses
B. Infections
i. Scalp
Agent
1. Tinea favosa
T. schoenleinii
2. Tinea capitis
a. Gray-patch
Microsporum spp.
ringworm
b. Black-dot
Trichophyton spp.
ringworm
C. Agents of Mycoses
2. Cutaneous Mycoses
B. Infections
ii. Beard
Agent
Tinea barbae
Trychophyton spp.
iii. Body
Tinea corporis
iv. Groin
Tinea cruris
Trychophyton spp.
Microsporum spp.
Epidermophyton sp.
C. Agents of Mycoses
2. Cutaneous Mycoses
B. Infections
v. Feet
Agent
Tinea pedis
Trychophyton spp.
(Athletes,
Epidermophyton sp.
Moccasin)
vi. Nail
Tinea unguium
Trychophyton spp.
Epidermophyton sp.
(Onychomycosis)
C. Agents of Mycoses
2. Cutaneous Mycoses
Dermatomycosis (Keratinized tissues)
Ringworm
Tinea
capitis
Tinea
corporis
Site
Agent
Agent
Affected
Microsporum
Microsporum
Trichophyton
Head
Trichophyton
Microsporum
Trichophyton
(hair)
Microsporum
Trichophyton
Trichophyton
Body
Epidermophyt
Epidermophyto
(skin)
Trichophyton
on
n
Epidermophyton
Trichophyton
Microsporum
Nails
Epidermophyt
C. Agents of Mycoses
2. Agents of Cutaneous Mycoses
C. Agents
Species
E.
floccosum
Microconidi
a
Absent
Macroconidia
Singly or in
clusters
Broad and
spatulate
Contains 2-5 cells
C. Agents of Mycoses
2. Agents of Cutaneous Mycoses
C. Agents
Species
M. canis
M.
gypseum
Microconidi
Macroconidia
a
Sparse:
Spindle shape,
clavate,
echinulate 3-15 cells,
sessile
tapered ends
Cigar-shaped, with
Sparse:
spiny surface and
clavate,
rounded tips
sessile
C. Agents of Mycoses
2. Agents of Cutaneous Mycoses
Other Tests
Species
M.
audouinii
M. canis
M.
gypseum
Growth in
Fluorescence
Rice Grains in Woods Lamp
Poor
Positive
Good
Positive
Good
Negative
C. Agents of Mycoses
2. Agents of Cutaneous Mycoses
C. Agents of Mycoses
2. Agents of Cutaneous Mycoses
C. Agents
Species
Microconidia
Teardrop/globose
T.
Grapelike
mentagroph
ytes
clusters
Clavate- pegT. rubrum
tear- shaped:
Sessile
Abundant tearT.
Macroconidia
Rare: Cigarshaped; Coiled
spiral hyphae
Pencil-shaped
Cylindrical
C. Agents of Mycoses
2. Agents of Cutaneous Mycoses
C. Agents
C. Agents of Mycoses
2. Agents of Cutaneous Mycoses
Other Test
Species
T.
mentagrophyt
es
T. rubrum
Thiamin
e
Req.
Urease
Hair
Baiting
Neg
Pos (2 d)
Pos
Neg
Neg (7
d)
Neg
C. Agents of Mycoses
1. Superficial Mycoses
2. Cutaneous Mycoses
3. Subcutaneous Mycoses
4. Systemic Mycoses
5. Opportunistic Mycosis
C. Agents of Mycoses
3. Subcutaneous Mycoses
A. General Characteristics
Result from traumatic puncture of
thorns
or vegetation
contaminated with fungi
B. Chromoblastomycosis
C. Eumycotic Mycetomas
D. Phaeohyphomycosis
E. Sporotrichosis
C. Agents of Mycoses
3. Subcutaneous Mycoses
B. Chromoblastomycosis
Verrucous dermatitidis and
chromomycosis
Caused by dematiaceous fungi
Species
Phialophora
verrucosa
Cladophialophora
carrionii
Fonsecaea spp.
C. Agents of Mycoses
3. Subcutaneous Mycoses
B. Chromoblastomycosis
Verrucous dermatitidis and
Specieschromomycosis
Microscopic Morphology
Phialoph
ora
verrucos
a
C. Agents of Mycoses
3. Subcutaneous Mycoses
C. Mycetomas
Granulomatous infection of tissue
Species
Microscopic Morphology
Anamorphic form of S.
Pseudallesch apiospernum
Cleistothecia containing
ria boydii
ascospores
C. Agents of Mycoses
3. Subcutaneous Mycoses
D. Phaeohyphomycosis
Caused by dematiaceous fungi
Chromoblastomyc
osis
Cladosporium
Fonsecaea
Phialophora
Eumycotic
Mycetomas
Exophiala
Other Species
Alternaria
Bipolaris
Curvularia
C. Agents of Mycoses
3. Subcutaneous Mycoses
A. General Characteristics
B. Chromoblastomycosis
C. Mycetomas
D. Phaeohyphomycosis
E. Sporotrichosis
C. Agents of Mycoses
3. Subcutaneous Mycoses
E. Sporotrichosis
Gardening, exposure to rose thorns
(rose-handlers disease)
moss Morphology
Speciesand sphagnum
Microscopic
Small, cigar shaped yeast
Sporothrix
Conidia in a rosette or sleeve
schenckii
pattern
C. Agents of Mycoses
3. Subcutaneous Mycoses
A. General Characteristics
B. Chromoblastomycosis
C. Eumycotic Mycetomas
D. Phaeohyphomycosis
E. Sporotrichosis
C. Agents of Mycoses
1. Superficial Mycoses
2. Cutaneous Mycoses
3. Subcutaneous Mycoses
4. Systemic Mycoses
5. Opportunistic Mycosis
C. Agents of Mycoses
4. Systemic Mycoses
A. General Characteristics
C. Agents of Mycoses
B.
Species
Ecology
River
B.
dermatitid valleys and
is
basins, soil
Bird, bat
H.
capsulatu
guano
m
alkaline soil
C. immitis
Soil
Disease/Manifestations
Gilchrist
Chicago
Cave, Spelunkers
Darling
Desert bumps, Valley
fever
Desert rheumatism
C. Agents of Mycoses
C. Morphology
Species
22C (Mold)
Ovoid conidia on
Blastomyces
short
dermatitidis
coniophores
Coccidioides
immitis
Barrel-shaped
arthroconidia
Histoplasma
capsulatum
Round, large,
tuber-culate
macroconidia
37C (Yeast)
Large yeast
Broad-based
bud
Spherules
containing
endospores
Small, oval
yeast
C. Agents of Mycoses
1. Superficial Mycoses
2. Cutaneous Mycoses
3. Subcutaneous Mycoses
4. Systemic Mycoses
5. Opportunistic Mycosis
C. Agents of Mycoses
5. Opportunistic Mycoses
A. General Characteristics
B. Zygomycetes
C. Septate and Hyaline Saprophytes
D. Septate and Dematiaceous
C. Agents of Mycoses
5. Opportunistic Mycoses
A. General Characteristics
Saprophytes and Opportunistic
Aseptate
Zygomycetes
Septate
Hyaline
Absidia
Mucor
Rhizopus
Aspergillus
Septate
Dematicaeous
Alternaria
Cladosporiu
m
Curvularia
C. Agents of Mycoses
5. Opportunistic Mycoses
B. Zygomycetes
Species
Absidia
Species
Mucor
Description
Sporangium, smooth and ovoid
Internodal Rhizoids
Description
Sporangia remain intact
Rhizoids are absent
C. Agents of Mycoses
5. Opportunistic Mycoses
B. Zygomycetes with Aspegillus
Species
Rhizopus
Species
Aspergill
us
Description
Sporangiophores clusters in a
stolon
Rhizoids is at the base of
Description
sporangiophores
Conidiophore that expands to a
vesicle
Vesicle is covered w/ phialides
C. Agents of Mycoses
1. Superficial Mycoses
2. Cutaneous Mycoses
3. Subcutaneous Mycoses
4. Systemic Mycoses
5. Opportunistic Mycosis
6. Yeast and Yeast-like
C. Agents of Mycoses
6. Yeast & Yeastlike Fungi
A. General Characteristics
B. Ecology and Disease
C. Candidiasis
D. Cryptococcosis
E. Geotrichosis
C. Agents of Mycoses
6. Yeast & Yeastlike Fungi
A. General Characteristics
Unicellular, budding & round to oval
organisms
Species
Candida albicans
Cryptococcus
neoformans
Geotrichum
candidum
C. Agents of Mycoses
6. Yeast & Yeastlike Fungi
A. General Characteristics
B. Ecology and Infection
C. Candidiasis
D. Cryptococcosis
E. Geotrichosis
C. Agents of Mycoses
B. Ecology and Infection
Species
Cryptoco
ccus
Species
neoforma
ns
Species
Ecology
Pigeon, bat
droppings
Ecology
Decaying
GI tract
vegetation
Mucus
Ecology
Geotrichu membranes
Soil
Candida
m
Decaying foods
albicans
a
Ecology
candidum
Geotrichu Soil
m
Decaying foods
candidum
Infection
Systemic
Infection
Meningitis
Thrush
Vulvovaginiti
Infection
s Oral, lung,
Diaper
skin, rash,
onychomyco
Infection
wound
sis
Oral, lung,
Paronychomy
skin, etc.
c.
C. Agents of Mycoses
6. Yeast & Yeastlike Fungi
C. Cryptococcosis (True Yeast)
Species
Lab Test
1. Cornmeal
Forms Round to oval yeast
w/ capsule & narrow-base
Cryptococc
budding
us
2. Colony (Niger Seed Agar)
neoformans
Forms Brown-black
colonies due to production
of phenol oxidase
C. Agents of Mycoses
6. Yeast & Yeastlike Fungi
C. Candidiasis (Yeast-like)
Species
Lab Test
1. Direct Examination
Blastoconidia
(budding
yeast / pseudohyphae)
Candida
2. Cornmeal (RT, 24-48 hrs)
albicans
Produces
Chlamydoconidia
3. Serum (35-37C, 1-3 hrs)
C. Agents of Mycoses
6. Yeast & Yeastlike Fungi
E. Geotrichosis (Yeast-like)
Species
Geotrichum
candidum
Lab Test
1. Cornmeal
Forms fragmented
hyphae
(rectangular
arthrospores w/ rounded
ends)
C. Agents of Mycoses
6. Yeast & Yeastlike Fungi
Other Characteristics
Species
Cryptococ
cus
neoforma
ns
Candida
albicans
Geotrichu
Capsul
es
Germ
Tubes
Chlamy
Blasto- Arthrodoconid
conidia conidia
ia
+
+
C. Agents of Mycoses
6. Yeast & Yeastlike Fungi
Other Characteristics
Species
Assimilatio Fermentati
n
on
Mal
C.
neoforma
ns
C.
Ino
Glu/ Mal/
Gal
+
+
Urease /
Phenol
Oxidase
+
+
C. Agents of Mycoses
6. Yeast & Yeastlike Fungi
A. General Characteristics
B. Ecology and Disease
C. Cryptococcosis
D. Candidiasis
E. Geotrichosis
C. Agents of Mycoses
1. Superficial Mycoses
2. Cutaneous Mycoses
3. Subcutaneous Mycoses
4. Systemic Mycoses
5. Opportunistic Mycosis
6. Yeast & Yeastlike Fungi
Outline
A.
B.
C.
D.
General Characteristics
Taxonomy
Agents of Mycoses
Laboratory Diagnosis
D. Laboratory Diagnosis
1. Safety Issues
2. Specimen Collection
3. Direct Examination
4. Isolation Methods
5. Examination of Growth
D. Laboratory Diagnosis
2. Specimen Collection
Blood / BM /
CSF
Systemic
Respiratory
Opportunistic + Dimorphic
Subcutaneous Tissue
Subcutaneous + Dimorphic
Hair, Skin and Nails
Superficial + Cutaneous
Throat, Urine, Vaginal,
Cervical
Candida
D. Laboratory Diagnosis
2. Specimen Collection
A. Hair
D. Laboratory Diagnosis
2. Specimen Collection
C. Blood & Bone Marrow
Lysis centrifugation
Culture (SPS/BHI)
Wrights and Giemsa
D. CSF
Concentration
India Ink / Latex agglu.
Culture (BHI)
D. Laboratory Diagnosis
2. Specimen Collection
E. Abscess & Lesions
D. Laboratory Diagnosis
2. Specimen Collection
F. Sputum (respiratory)
D. Laboratory Diagnosis
2. Specimen Collection
H. Throat
2 swabs
Culture (SDA, SDA-CC)
I. Vaginal & Cervical
2 swabs
KOH / Culture (SDA, SDA-CC)
D. Laboratory Diagnosis
2. Specimen Collection
A. Hair
F. Sputum
B. Skin & Nails
G. Urine
C. Blood & BM
H. Throat
D. CSF
I. Vaginal &
E. Abscess & Lesions Cervical
D. Laboratory Diagnosis
3. Direct Examination
A. KOH
D. Laboratory Diagnosis
3. Direct Examination
E. Tissue Stains
D. Laboratory Diagnosis
3. Direct Examination
A. KOH
B. KOH w/ Calcofluor white
C. India Ink
D. LCPB
E. Tissue Stains
D. Laboratory Diagnosis
4. Isolation Methods
A. Growth Requirements
B. Fungal Culture Media
C. Macroscopic Examination
D. Laboratory Diagnosis
4. Isolation Methods
A. Growth Requirements
i.
ii.
Temperature
iii.
Time
D. Laboratory Diagnosis
4. Isolation Methods
A. Growth Requirements
B. Fungal Culture Media
C. Macroscopic Examination
D. Laboratory Diagnosis
4. Isolation Methods
B1.
i.
ii.
iii.
.
D. Laboratory Diagnosis
4. Isolation Methods
B. Fungal Culture Media
D. Laboratory Diagnosis
4. Isolation Methods
B2.
i.
C. neoformans
Detects phenol oxidase
Black-brown colonies
Cornmeal agar
ii.
w/ Tween 80
Candida
Stimulates conidia &
chlamydospore production
D. Laboratory Diagnosis
4. Isolation Methods
B2.
iii.
B. dermatitidis
Induces conversion of mold to
yeast
iv.
D. Laboratory Diagnosis
4. Isolation Methods
B2.
v.
Differentiation of Microsporum
species
D. Laboratory Diagnosis
4. Isolation Methods
B 2.
vi.
vii.
a.
b.
Fermentation of carbohydrates
D. Laboratory Diagnosis
4. Isolation Methods
B. Fungal Culture Media
D. Laboratory Diagnosis
4. Isolation Methods
A. Growth Requirements
B. Fungal Culture Media
C. Macroscopic Examination
D. Laboratory Diagnosis
4. Isolation Methods
Macroscopic Examination
C.
i.
ii.
iii.
iv.
Growth Rate
Topography
Texture
Pigmentation
E. Laboratory Diagnosis
1. Safety Issues
2. Specimen Collection
3. Direct Examination
4. Isolation Methods
5. Examination of Growth
Outline
A.
B.
C.
D.
General Characteristics
Taxonomy
Agents of Mycoses
Laboratory Diagnosis
Please read reference
books
(Suggested references)
Delost & Mahon