Acremonium em Solos
Acremonium em Solos
Acremonium em Solos
3852/11-402
# 2012 by The Mycological Society of America, Lawrence, KS 66044-8897
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GIRALDO ET AL.: NEW SPECIES OF ACREMONIUM 1457
closed with rubber bands. In the laboratory samples were NITE Biological Resource Center (NBRC) and GenBank
stored at 4–7 C until they were processed. One gram of each databases. Sequences were aligned with ClustalX 1.8
soil sample was washed repeatedly with 10 mL sterilized water (Thompson et al. 1997) with default parameters, followed
to reduce excessive microbial growth. After the final wash, by manual adjustments with a text editor. The phylogenetic
excess water was decanted and the remaining soil was relationships were predetermined with ITS sequences. A
distributed among three Petri dishes. Potato dextrose agar multilocus sequence analysis of a selected group subsequently
(PDA, Difco Laboratories, Detroit, Michigan), supplemented was carried out to confirm the results obtained from ITS data.
with chloramphenicol (200 mg/L) and cycloheximide at a For the first analysis we used Gblocks 0.91b software with
final concentration of 2 g/L at 45 C, was mixed with the soil, relaxing selection parameters (Castresana 2000, Talavera and
and once solidified the cultures were incubated at 25 C in the Castresana 2007) to remove ambiguous (unalignable) parts.
dark. All cultures were examined weekly with a stereomicro- The phylogenetic analysis was carried out with MEGA 4.0
scope up to 1 mo. To purify isolates conidia were transferred (Tamura et al. 2007), with neighbor joining (NJ) (Saitou and
with a sterile dissection needle from isolation plate cultures Nei 1987) and the algorithm Kimura 2-parameter to obtain
to Petri dishes containing potato carrot agar (PCA; 20 g the distance tree. Gaps were treated as pairwise deletion.
potatoes, 20 g carrot; 20 g agar, 1000 mL distilled water) Support for internal branches was assessed by a search of 1000
prepared by ourselves following the procedure in Onions bootstrapped sets of data. The multilocus sequence analysis
and Pitt (1988) and incubated at 25 C in the dark. comprised 19 of the 51 isolates, including the soil isolates and
phylogenetically related type and reference strains of
Fungal isolates.—In addition to the isolates obtained with
Acremonium and other genera. Other randomly selected type
the above procedure, numerous reference strains of
or reference strains were included in the analysis. The most
morphologically similar species were included in the study
parsimonious trees of the combined dataset, including ITS,
(TABLE I). They were provided mainly by the CBS-KNAW
D1/D2 and actin gene, were performed with PAUP* 4.0b10
Fungal Biodiversity Centre (CBS) (Utrecht, the Nether-
(Swofford 2002). One hundred heuristic searches were
lands) and the Mycothèque de l’Université Catholique de
conducted with random sequence addition and tree bisec-
Louvain (MUCL) (Louvain-la-Neuve, Belgium).
tion-reconnection branch-swapping algorithms, collapsing
DNA extraction, amplification and sequencing.—Isolates zero-length branches and saving all minimal-length trees
were grown on yeast extract sucrose agar (YES; yeast extract (MULTREES). Gaps were treated as missing data. The internal
2%, sucrose 15%, agar 2%, 1000 mL water) 5 d at 25 C, and branch support was assessed with a heuristic parsimony search
DNA was extracted with a PrepMan Ultra sample prepara- of 1000 bootstrapped datasets. Tree length, consistency,
tion reagent (Applied Biosystems, Foster City, California), homoplasy and retention indexes (CI, HI, RI respectively)
according to the manufacturer’s protocol. DNA was were recorded. The combined dataset was tested for
quantified with GeneQuant pro (Amersham Pharmacia incongruence with the partition homogeneity test (PHT), as
Biotech, Cambridge, UK). The internal transcribed spacer implemented in PAUP*.
(ITS) region and D1/D2 domains of the 28S of the nuclear
Phenotypic studies.—Macro- and microscopic features of the
rRNA gene were amplified respectively with the primer pairs
soil isolates were studied on oatmeal agar (OA; 30 g filtered
ITS5/ITS4 and NL1/NL4, following the protocols of Cano
oat flakes after 1 h simmering, 20 g agar, 1000 mL distilled
et al. (2004) and Gilgado et al. (2005). A fragment of the
water) prepared by ourselves following the procedure of
actin gene was amplified with the primer pairs Act1/Act4
Onions and Pitt (1988), malt extract agar 2% (MEA, Difco
(Voigt and Wöstermeyer 2000). PCR products were purified
Laboratories) and PDA, incubated at 25 C in the dark 7–14 d
with a GFXTM PCR DNA kit (Pharmacia Biotech, Cerda-
up to 1 mo. The isolates’ ability to grow at 5, 15, 20, 25, 30,
nyola, Spain) and were stored at 220 C until sequencing.
32, 35 and 37 C was tested on PDA. Color notations in
PCR products were sequenced with the same primers used
parentheses were taken from Kornerup and Wanscher
for amplification and following the Taq DyeDeoxy Termi-
(1978). Microscopic features were examined by making
nator cycle sequencing kit protocol (Applied Biosystems,
direct wet mounts with 85% lactic acid or lactophenol
Gouda, the Netherlands). DNA sequencing reaction mix-
cotton blue or by slide cultures on OA, with an Olympus
tures were analyzed on a 310 DNA sequencer (Applied
CH-2 light microscope. Photomicrographs were obtained
Biosystems). In addition, some amplified fragments were
with a Zeiss Axio-Imager M1 light microscope with phase
purified and sequenced at Macrogen Inc. (Seoul, South
contrast and Nomarski differential interference.
Korea) with a 3730XL DNA analyzer (Applied Biosystems).
The program SeqMan (7.0.0 DNASTAR, Madison, Wiscon- Nucleotide sequence accession numbers.— The new DNA
sin) was used to obtain consensus sequences of each isolate. sequences generated in this study were deposited in
Some ITS sequences, corresponding to several species of GenBank (TABLE I). The alignment used in the phyloge-
Acremonium or other genera phylogenetically related in netic analysis was deposited in TreeBASE (www.treebase.
Summerbell et al. (2011) or that were morphologically org, submission number 12146).
similar to our isolates, were retrieved from GenBank and
included in the phylogenetic analysis (TABLE I).
RESULTS
Aligment and phylogenetic analysis.— BLAST sequence
identity queries (Altschul et al. 1990) were carried out to Phylogenetic analysis.—The BLAST query revealed
compare the soil isolates with other fungi deposited in the that ITS sequences of our unidentified Acremonium
1458 MYCOLOGIA
TABLE I. Species and strains included in the study, their origin and GenBank accession numbers
TABLE I. Continued
FMR Faculty of Medicine Reus, Spain; CBS-KNAW Fungal Biodiversity Centre, Utrecht, the Netherlands; MUCL,
Mycothèque de l’Université Catholique de Louvain, Louvain-la Neuve, Belgium; T type strain; Accession numbers of sequences
newly determined in this study are indicated in boldface.
isolates did not match significantly any sequence other the ex-type strains of Acremonium borodinense
deposited in GenBank or NBRC. The phylogenetic Tad. Ito, Okane, Nagak. & W. Gams and A.
tree inferred from neighbor joining analysis of the pinkertoniae W. Gams and a reference strain of A.
ITS sequences revealed that the seven isolates of blochii W. Gams. In the phylogenetic study, numerous
Acremonium sp. I and the two isolates of Acremonium species were included that showed morphological
sp. II were clustered with different members of the similarities with the two possible new species but all
Bionectriaceae, where the ex-epitype strain of A. were distributed distantly from Acremonium species I
alternatum (CBS 407.66) was included. Acremonium sp and II in the ITS tree.
I and II grouped into a highly supported terminal For the multilocus sequence analysis, we selected
clade (100% bootstrap support [bs]) located far from strains that were closely related to the soil isolates in
remaining species included in this study (FIG.1). The the first analysis, supplemented with reference strains
clade was split into two well supported sister clades of Acremonium and related taxa (TABLE I). With our
(92% and 100% bs, respectively), each of them primer set we were able to amplify and sequence 434–
including one of the two mentioned species. A highly 550 bp, 435–584 bp and 712–835 bp of the ITS
supported (94% bs) sister clade of I and II, although regions, D1/D2 of 28S rRNA and the partial actin
phylogenetically distant, also included two subclades. gene respectively. Of the 1668 characters from the
One of them comprised the ex-type strains of the three loci used in this analysis, 303 were parsimony
ascomycetes Bulbithecium hyalosporum Udagawa & T. informative. The lowest number was 47 for D1/D2
Muroi and Leucosphaerina arxii Malloch and the and the highest was 133 for ITS. The result of the
1460 MYCOLOGIA
FIG. 1. Neighbor joining tree constructed with sequences of the ribosomal internal transcribed spacer (ITS) regions and
5.8S rRNA gene. Branch lengths are proportional to distance. Bootstrap support values above 60% are indicated at the nodes.
T
5 type strain.
partition homogeneity test showed that the datasets 0.3411 and a RI of 0.8046, were produced from
for the three loci were congruent (P 5 0.16) and heuristic searches with the combined dataset from the
could be combined. A total of 1142 most parsimoni- three loci (FIG. 2). The isolates identified as Acremo-
ous trees, 465 steps long, with a CI of 0.6589, an HI of nium sp. I and II clustered in a well supported clade
GIRALDO ET AL.: NEW SPECIES OF ACREMONIUM 1461
FIG. 2. One of 1142 most parsimonious trees obtained from heuristic searches based on analysis produced from the
combined ITS, D1/D2 and actin datasets. Bootstrap support values are indicated at the nodes. CI 5 consistency index; HI 5
homoplasy index; RI 5 retention index. Bootstrap support values above 70% are indicated at the nodes. T 5 type strain.
divided in two subclades representing each of the two between the sequences of the two species were 3–
species. The combined tree topology was similar to 4.6% for the three loci.
the one observed in the trees of individual genes
analyzed with NJ (data not shown). The sequences of Phenotypic studies.—Cardinal temperatures after 14 d
the seven strains of Acremonium sp. I had 100% in the dark were similar for Acremonium sp. I and
homology in each of the three loci studied. Those of Acremonium sp. II, that is the minimum, optimum
the two strains of Acremonium sp. II showed 99.8% and maximum growth temperatures were respectively
homology for the ITS region and 100% for the D1/ 5 C (2–7 mm diam), 20–25 C (26–44 mm diam) and
D2 domains and the actin fragment. The differences 32 C (2–4 mm diam). No isolate of either species grew
1462 MYCOLOGIA
FIG. 3. Acremonium asperulatum FMR 11136 (A, B), CBS 130362 (C–F), FMR 11137 (G) and A. variecolor CBS 130360 (H–
N). A, B. Colonies on PDA and OA respectively at 25 C after 22 d. C. Branched conidiophores. D. Phialide with a basal septum
and conidia arranged in slimy heads. E. Phialides with collarettes. F, G. Globose rough- and thick-walled conidia and
chlamydospores. H–J. Colonies on PDA (obverse and reverse) and OA respectively at 25 C after 22 d. K, L. Branched
conidiophores and conidia arranged in slimy heads. M. Phialide with conidia arranged in slimy heads. N. Subglobose conidia
with apiculate base and a sessile conidium on vegetative hyphae (arrow). Bars: C–G, K–N 5 10 mm.
GIRALDO ET AL.: NEW SPECIES OF ACREMONIUM 1463
at 35 C. Colonies at 20–30 C were flat, slightly cottony de Bujaruelo, isolated from forest soil, Jun 2009, M.
and whitish. They were characterized microscopically Hernández, J. Mena & J. Cano (HOLOTYPE, IMI 500816;
by more or less erect conidiophores with whorls of culture ex-type, CBS 130362 5 MUCL 53781 5 FMR
acicular phialides. Acremonium sp. I produced abun- 11065); isolated from sediments of Ara River, Mar 2011,
M. Hernández, A. Giraldo & X. Capilla (CBS 130363 5
dant chlamydospores, and its conidia were rough-
MUCL 53782 5 FMR 11783). Ordesa y Monte Perdido
walled and globose. Acremonium sp. II produced a
National Park: Añisclo canyon, isolated from forest soil, Jun
brownish diffusible pigment on PDA, and its conidia 2009, M. Hernández, J. Mena & J. Cano (FMR 11135, FMR
were smooth-walled, subglobose with an apiculate 11137); Ordesa Valley, Broto, isolated from forest soil, Jun
base. In addition, sessile conidia growing directly 2009, M. Hernández, J. Mena & J. Cano (FMR 11136 and
from vegetative hyphae were observed in the latter FMR 11138); Ordesa Valley, Torla, isolated from forest soil,
species on all media tested. Jun 2009, M. Hernández, J. Mena & J. Cano (FMR 11139).
Nature Reserve Sierra de Os Ancares, isolated from forest logically by having smaller and simple conidiophores
soil, May 2010, M. Hernández, J. Mena & J. Guarro (CBS (25–30 and 17–27 mm long respectively), by absence
130361 5 MUCL 53780 5 FMR 11141). of chlamydospores, and by colonies with a colorless
reverse (Gams 1971, Ito et al. 2000). In addition, A.
DISCUSSION borodinense produces two types of phialidic conidia,
both with morphological features different from the
Based on the combination of a multilocus analysis species described here (Gams 1971, Ito et al. 2000).
and phenotypic features, we propose and describe The two types of conidia observed in A. variecolor
two new species of Acremonium, A. asperulatum and A. differ in their ontogeny: One is phialidic and the
variecolor. Apart from morphological features, the other is blastic. The latter kind of conidia also was
reason for including these fungi in Acremonium was described in Pochonia suchlasporia W. Gams & Dack-
based mainly on the recent phylogenetic study carried man (Gams 1988, Zare et al. 2001), but this species is
out by Summerbell et al. (2011). After discussing phylogenetically distant from A. variecolor (FIG. 1).
several alternatives concerning the epitypification of Acremonium blochii, which was nested in a clade close
Acremonium, Summerbell et al. (2011) designated to that of A. variecolor, has morphologically similar
CBS 407.66 as epitype of A. alternatum, the type phialidic conidia, but these are arranged in long
species of the genus. The phylogentic D1/D2 tree chains or slimy heads and it has only single phialides.
given in that study shows that the strain belonged to Other Acremonium species included in Bionectria-
the family Bionectriaceae, where a large group of ceae, with some morphological features similar to our
species currently accepted in Acremonium also were new taxa, are Acremonium fusidioides (Nicot) W. Gams
placed. Therefore, all those Acremonium-like fungi and A. hansfordii (Deighton) W. Gams. Both produce
that are phylogenetically close to CBS 407.66 should a characteristic brownish diffusible pigment (Gams
be recognized as Acremonium sensu stricto. Our ITS 1971, 1975), but they usually have simple conidio-
sequences analyses showed that the two new species phores; A. hansfordii has fusiform and more or less
make up a well supported clade, with some members brown-pigmented conidia with truncate ends; A.
of the Bionectriaceae being related at the same time fusidioides produces two types of phialidic conidia,
to the epitype of A. alternatum. the most abundant ones being slightly pigmented and
These novel Acremonium species are characterized fusiform and the less common ones globose and
mainly by the production of verticillately branched hyaline (Gams 1971, 1975). In our ITS analysis both
conidiophores, long phialides and by the production species formed a well supported lineage distant from
of globose or ovoid, thick-walled conidia. Key our new species.
morphological features that differentiate the two
fungi are that A. asperulatum produces chlamydo-
spores and has globose conidia with rough walls ACKNOWLEDGMENTS
arranged in slimy heads, while A. variecolor produces We are indebted to the curators of the CBS-KNAW Fungal
a characteristic diffusible brownish pigment on PDA Biodiversity Centre (Utrecht, the Netherlands) and the
and has two types of conidia, subglobose with an Mycothèque de l’Université Catholique de Louvain (Lou-
apiculate base grouped in slimy heads on the vain-la-Neuve, Belgium) for supplying many of the strains
phialides and solitary and sessile elongated conidia, used in the study. This study was supported by the Spanish
arising directly on vegetative hyphae. Chlamydospores Ministerio de Educación y Ciencia, grants CGL 2009-08698/
were not observed in the latter species. The conjunc- BOS and CGL 2011-27185/BOS.
tion of such characteristics with their phylogenetic
distances from the other species of Acremonium and
LITERATURE CITED
related genera makes these two species clearly
different from all the known fungal species. In the Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990.
phylogenetic trees, the clade with the Bionectriaceae Basic local alignment search tool. J Mol Biol 215:403–410.
species Bulbithecium hyalosporum, Leucosphaerina Cano J, Guarro J, Gené J. 2004. Molecular and morpholog-
arxii, Acremonium borodinense, A. pinkertoniae and A. ical identification of Colletotrichum species of clinical
interest. J Clin Microbiol 42:2450–2454, doi:10.1128/
blochii was the closest to the new taxa. The former two
JCM.42.6.2450-2454.2004
species develop Acremonium anamorphs, which can
Castresana J. 2000. Selection of conserved blocks from
be distinguished from the novel species by their multiple alignments for their use in phylogenetic
simple and much smaller conidiophores (12–40 mm analysis. Mol Biol Evol 17:540–552, doi:10.1093/
long) and ellipsoidal conidia (Malloch 1989, Uda- oxfordjournals.molbev.a026334
gawa and Muroi 1990). The other two species, A. Das S, Saha R, Dar S, Ramachandran VG. 2010. Acremonium
borodinense and A. pinkertoniae, also differ morpho- species: a review of the etiological agents of emerging
GIRALDO ET AL.: NEW SPECIES OF ACREMONIUM 1465