The Immune System: A Tutorial: Modeling and Simulation of Biological Systems 21-366B Shlomo Ta'asan

The Immune System: A Tutorial
Modeling and Simulation of Biological Systems 21-366B
Shlomo Ta’asan
Images taken from

http://rex.nci.nih.gov/behindthenews/uis/uisframe.htm
http://copewithcytokines.de/
The Immune System
The immune system is a body-wide

network of molecules, cells and
organs that has evolved to defend
the body against attacks by
"foreign" invaders.
The targets of the immune defenses

are infectious organisms including:
Bacteria, Fungi, Parasites, and
Viruses
Markers of Self
At the heart of the immune response

is the ability to distinguish
between self and nonself.
Every body cell carries distinctive

molecules that distinguish it as
"self." Normally the body's
defenses do not attack tissues
that carry a self marker; rather,
immune cells coexist peacefully
with other body cells in a state
known as self-tolerance.
Markers of Non-Self
Most foreign molecules carry

distinctive markers.
The immune system is able to

recognize many millions of
distinctive non-self molecules, and
to respond in different ways.
An antigen: a substance capable of

triggering an immune response is
called an antigen (e.g., bacterium,
virus, cells from another
individual)
A Huge Network
Interacting:
Organs
Thymus, Spleen, Lymph node, Bone marrow,…
Cells
Macrophages, Neutrophils, Dendritic cells, B cells, T cells, ..
Molecules
Complement system, Cytokines,…
(Weakly?) Coupling with the nervous system

Organs of the Immune System
The organs of the immune system are

stationed throughout the body.
They are known as lymphoid organs

because they are concerned with
the growth, development, and
deployment of lymphocytes—
white blood cells that are key
operatives of the immune system.
Lymphatic System
The organs of the immune system are

connected with one another and with
other organs of the body by a
network of lymphatic vessels similar
to blood vessels.
Immune cells and foreign particles are conveyed through the

lymphatics in lymph, a clear fluid that bathes the body's tissues.
Lymph Node
Lymph nodes are small, bean-shaped

structures that are laced
throughout the body along the
lymphatic routes.
Lymph nodes contain specialized

compartments where immune
cells congregate, and where they
can encounter antigens.
Cells of the Immune System
Cells of the immune system arise in

the bone marrow from stem cells.
Two groups of cells are the myleoids

and lymphoids. Myeloid cells
include monocytes,
macrophages, neutrophils,
eosinophils and basophils. The
two major classes of lymphocytes
are B cells and T cells.
B Cells
B cells work chiefly by secreting

soluble substances known as
antibodies.
Each B cell is programmed to make

one specific antibody. When a B
cell encounters its triggering
antigen (along with various
accessory cells), it gives rise to
many large plasma cells. Each
plasma cell is essentially a factory
for producing that one specific
antibody.
Antibody
Each antibody is made up of two

identical heavy chains and two
identical light chains.
The tips of the Y: recognition sites.
The stem of the Y: link to other

participants in the immune
defenses.
Many tips, and only a few stems.
Antibodies belong to a family of large

protein molecules known as
immunoglobulins
IgG, IgD, and IgE
There are nine chemically distinct

classes of human
immunoglobulins, IgG and two
kinds of IgA, plus IgM, IgE, and
IgD.
IgG: able to enter tissue spaces;
IgD mostly the membrane of B cells,

(regulates the cell's activation).
IgE is responsible for the symptoms

of allergy
IgA and IgM
IgA—a doublet, exists in tears, saliva,

and the secretions of the
respiratory and gastrointestinal
tracts. guard the entrances to the
body.
IgM usually in star-shaped clusters. It

tends to remain in the
bloodstream.
T Cells
T cells are of three main classes
(i) regulate the complex workings of

the immune system.
(ii) directly contact infected cells and

destroy them.
(iii) turn off or suppress immune cells.

Cytokines
A diverse and potent chemical

messengers secreted by the cells
of the immune
Cytokines encourage cell growth,

promote cell activation, direct
cellular traffic, and destroy target
cells—including cancer cells.
Natural Killer Cells
NK cells do not have a specific

recognition.
Both Killer T cells and NK cells types

contain granules filled with potent
chemicals, and kill on contact.
The killer binds to its target, aims its

weapons, and delivers a burst of
lethal chemicals.
Phagocytes and Granulocytes
Phagocytes: large white cells that can

engulf and digest foreign invaders.
Monocytes: circulate in the blood,
Macrophages: in tissues throughout

the body,
Neutrophils: circulate in the blood, but

move into tissues when needed.
Phagocytes in the Body
Specialized phagocytes are found in

organs throughout the body.
The Complement System
The complement system: a series of

proteins that work to "complement" the
work of antibodies in destroying bacteria.
Complement proteins circulate in the blood

in an inactive form.
Antigen Receptors
B cells and T have receptors for

recognizing and responding to
specific targets.
The B cell's antigen-specific receptor =
antibody it can manufacture; it
recognizes antigen in its natural
state.
A T cell can recognize an antigen only
after the antigen is processed and
presented to it by a so-called
antigen-presenting cell, in
combination with a special type of
cell marker (MHC).
CD4 T cell's receptor MHC II, found
on immune system cells (B-cells,
Macrophages, D-Cells)
CD8 T cell's receptor MHC I; found on
virtually all body cells.
B Cells Activation
The B cell + specific antigen Ł B cell

engulf and process antigen.
Antigen fragment (peptide) + special

marker (MHC II) B cell surface.
T recognizing peptide+MHC T cell

releases cytokines transforming
the B cell into an antibody-
secreting cell (plasma cell).
Helper T Cell activation
APC (Antigen presenting cell,

(macrophage, B cell, D cell) +
specific CD4 T cell APC
releases cytokines T cell
matures T cell releases
cytokines
Cytotoxic T cell activation
When The Immune System Fails
Allergy
Autoimmune diseases
Cancer
…
Allergy
First exposure to an allergen B

cells make large amounts of IgE
antibodies.
These IgE molecules attach to mast
cells, (in lungs, skin, tongue, and
linings of the nose and
gastrointestinal tract)
Next exposure to allergen the IgE-
primed mast cell releases chemicals
causing wheezing, sneezing, and
other symptoms of allergy.
Immune Complex Disease
Immune complexes: clusters of

interlocking antigens and
antibodies.
Normally they are rapidly removed

from the bloodstream. If they
continue to circulate, can be
trapped and damage the tissues
of the kidneys, as seen here, or in
the lungs, skin, joints, or blood
vessels.
AIDS
AIDS is an immunodeficiency
disorder caused by a virus that
destroys helper T cells and that is
harbored in macrophages as well
as helper (T4) T cells. The AIDS
virus splices its DNA into the DNA
of the cell it infects; the cell is
thereafter directed to churn out
new viruses.
Immunity and Cancer
When normal cells turn into cancer

cells, some of the antigens on
their surface change.
These new or altered antigens flag

immune defenders, (cytotoxic T
cells, NK cells, and macrophages)
that eliminate cancerous cells.
Tumors develop when the

surveillance system breaks down
or is overwhelmed.
The Immune & Nervous
Systems
Hormones and other chemicals,

(neuropeptides: messengers
among nerve cells), "speak" to
cells of the immune system—and
some immune cells even
manufacture such chemicals
(neuropeptides)
Networks of nerve fibers connect

directly to the lymphoid organs.

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The Immune System: A Tutorial

Modeling and Simulation of Biological Systems 21-366B

Images taken from

The immune system is a body-wide

The targets of the immune defenses

At the heart of the immune response

Every body cell carries distinctive

Most foreign molecules carry

The immune system is able to

An antigen: a substance capable of

(Weakly?) Coupling with the nervous system

The organs of the immune system are

They are known as lymphoid organs

The organs of the immune system are

Immune cells and foreign particles are conveyed through the

Lymph nodes are small, bean-shaped

Lymph nodes contain specialized

Cells of the immune system arise in

Two groups of cells are the myleoids

B cells work chiefly by secreting

Each B cell is programmed to make

Each antibody is made up of two

The tips of the Y: recognition sites.

The stem of the Y: link to other

Many tips, and only a few stems.

Antibodies belong to a family of large

There are nine chemically distinct

IgG: able to enter tissue spaces;

IgD mostly the membrane of B cells,

IgE is responsible for the symptoms

IgA—a doublet, exists in tears, saliva,

IgM usually in star-shaped clusters. It

T cells are of three main classes

(i) regulate the complex workings of

(ii) directly contact infected cells and

(iii) turn off or suppress immune cells.

A diverse and potent chemical

Cytokines encourage cell growth,

NK cells do not have a specific

Both Killer T cells and NK cells types

The killer binds to its target, aims its

Phagocytes: large white cells that can

Monocytes: circulate in the blood,

Macrophages: in tissues throughout

Neutrophils: circulate in the blood, but

Specialized phagocytes are found in

The complement system: a series of

Complement proteins circulate in the blood

B cells and T have receptors for

The B cell + specific antigen Ł B cell

Antigen fragment (peptide) + special

T recognizing peptide+MHC T cell

APC (Antigen presenting cell,

First exposure to an allergen B

Immune complexes: clusters of

Normally they are rapidly removed

When normal cells turn into cancer

These new or altered antigens flag