Clinical Chemistry: Presented By: Haya Mansour SLLE Exam 2022
Clinical Chemistry: Presented By: Haya Mansour SLLE Exam 2022
Presented by:
Haya Mansour
SLLE Exam
2022
• Sample collection.
• Carbohydrates.
• Acid-base balance.
Outline • Electrolytes.
• Proteins.
• Enzymes.
• Lipids and lipoproteins.
• Endocrinology.
• Tumor markers.
• Chemistry questions for SLLE Exam.
Sample collection
Types of tubes used in chemistry lab:
1- Plan tube or red tube:
- Serum “without anticoagulant”.
- Used for most chemistry tests.
2- Heparin tube “lithium heparin”
- Plasma “with anticoagulant”.
- Used for chemistry test.
3- Sodium fluoride tube:
- Used for measurement blood glucose. “glycolysis inhibitor”
4- EDTA tube:
- Whole blood.
- Used for HbA1C measurement.
Should be collected Ammonia and lactic acid into EDTA or heparin tubes, Ammonia concentrations increase rapidly in blood after
separated immediately and the plasma kept on ice until analysis. venepuncture so samples must be immediately placed on ice
after labelling and sent to the laboratory within 20 minutes of
venepuncture. Inform the laboratory before the sample is taken
so that analysis can be performed without delay.
CARBOHYDRATES
Introduction
• Carbohydrates are distributed widely in the body, and have:
- Metabolic functions - Glucose (the principal form and the major fuel for cellular metabolism)
- Structural functions: - the precursor of other sugars, such as ribose which is found in: nucleic acids,
and of the carbohydrate moieties of glycoproteins.
Glycolysis consist of 10 reactions that take place in the cytosol and are catalyzed by
different enzymes.
Measurement:
• Three enzymatic methods are available:
- Hexokinase, glucose oxidase and glucose dehydrogenase.
Specimen Considerations:
• Glucose may be analyzed on a variety of samples including:
- Serum.
- Plasma (5% lower than serum).
- Whole blood (~15% lower than plasma).
- Urine: looking for glucose and ketones
Hemoglobin A1c
• Hemoglobin A is composed of three forms, Hb A I a, Hb A I b, and Hb A I c, which
are referred to as glycated or glycosylated hemoglobin.
• Glycated hemoglobin is formed by attachment of glucose to hemoglobin A.
• Is used as a measure of long-term gly-cemic control (2- to 3-month period).
• Used to diagnose and monitor treatment of diabetes.
• Sample: whole blood “EDTA”.
Diabetes mellitus
• Is a disorder in which the body does not produce enough or respond normally to insulin,
causing blood sugar (glucose) levels to be abnormally high.
Acidosis:
Is usually associated with renal failure.
ACID-BASE
The pH of plasma is a function of two independent variables: the (PC02),
which is regulated by the lungs or (respiratory mechanism), and the
concentration of bicarbonate (HC03), which is regulated by the kidneys
(renal mechanism).
Normal values:
• PH = 7.35 – 7.45 PCO2 = 35 – 45 mmhg HCO3 = 22 – 28 meq/L.
Major cations
Extracellular: Intracellular:
Sodium “Na+”. Potassium “K+”
• Sodium (Na+):
- Major cation of extracellular fluid. - 85% is reabsorbed in the kidney tubules.
- Largest constituent of plasma osmolality.
- Hypernatremia (High Na):
a Cushing’s syndrome.
b- Dehydration.
c- Hyperaldosteronism.
d- diabetes insipidus.
- Hyponatremia (Low Na):
a- Diabetes acidosis
b- Diarrhea
c- Addison’s disease
• Potassium (K+):
- Major cation of intracellular fluid.
- 23 times higher in cells than plasma.
Specimen collection and handling:
- Separate serum from cell quickly to present K+ from shifting to serum.
- False increase in K+ (psuedohyperkalemia) seen in hemolysis, prolonged tourniquet.
- Hypokalemia (Low K+):
A - insulin injection.
B - Alkalosis.
C - Diarrhea and vomiting.
D - Hyperaldosteronism.
E - Cushing’s disease.
- Hyperkalemia (High K+):
A- Diabetes acidosis.
B- Intravascular hemolysis.
C- Adisson’s disease.
Chloride (Cl-)
- Major inion of intracellular fluid.
- Maintains hydration, osmotic pressure and normal anion-cation balance.
- Cl generally follows Na+ so high and low in same condition.
- Hypochloremia (Low Cl-):
a- Diabetese acidosis.
b- Chronic Pyelonephritis.
c- Aldosterone Deficiency.
- Hyperchloremia (High Cl-):
- Prolonged diarrhea.
- Renal tubular acidosis.
- Adrenocortical hyperfunction.
Calcium (Ca+):
• Three forms present in plasma: 45% ionized calcium (biologically active form),
• 45% protein bound, and 10% complexed with anions.
• Controlled by action of PTH and vitamin D on bone and kidney and intestines.
• Has widespread functions, including formation of bone, coagulation, neurologic and
neuromuscular function, and nonspecific binding.
• Hypercalcemia:
- primary hyperparathyroidism.
- other endocrine disorders such as hypothyroidism.
- Acute adrenal insufficiency.
- Malignancy involving bone,.
- Renal failure.
• Hypocalcemia:
- Hypoparathyroidism.
- Hypoalbuminemia
- Chronic renal failure, magnesium deficiency, and vitamin D deficiency.
Phosphorus (PO4):
• Functions in energy metabolism, nucleic acid metabolism, bone formation, cell
signaling, and acid-base homeostasis.
Osmolality
• is a measure of solute concentration of a solution; a measure dependent on the
number (not size and charge) of particles in solution.
PROTEINS.
• Proteins are essential compounds comprising 50-70% of the cell’s dry
weight.
• They are present in all of the body cells, fluids, secretions and excretions.
• Made up of many different amino acids linked together.
• Made up of thousands of different proteins, each with a specific
function. They make up the structural components of our cells and
tissues as well as many enzymes, hormones and the active proteins
secreted from immune cells.
Classifications of proteins:
1- Simple proteins:
• Contain only polypeptide chain and yield amino acid upon hydrolysis.
• These may be Globular e.g. albumin or Fibrous in shape e.g. collagen
and keratin.
2- Conjugated proteins:
• These are composed of globular proteins plus a non-protein moiety that
could be a lipid, a carbohydrate, porphyrins, or a metal.
• A separation technique.
• Simple, rapid and highly sensitive.
• Used in clinical laboratories to separate charged molecules from each other in
presence of electric field.
Agarose gel electrophoresis
depends upon consistent current
Proteins in body fluids: serum, urine, CSF flow for a specific time period, this
Proteins in erythrocytes: HB. allows proteins to migrate towards
Nucleic acids: DNA, RNA. anode.
• Principle:
• Migration of charged particle of any size in liquid medium “agarose gel or cellulose
acetate” under the influence of electric field.
• Depending on kind of charge the molecule carry, they move towards either to
“cathode” or to “Anode”.
• Negatively charged particles migrate toward the positive electrode (anode), and
positively charged particles migrate toward the negative electrode (cathode).
Stained protein gel shows
• Medium is put in contact with the buffer (stain used are: ponceau S, amido black),
various fractions. The main
while ethidium bromide used for DNA.
fractions being albumin,
alpha 1, alpha 2, beta and
gamma.
Protein types % in blood g/l in blood
Total - 60-84
1- Albumin 60 35-55
Decrees of gamma
Abnormal electrophoretic patterns
• Function:
- Contributes in maintaining colloidal osmotic pressure of the
intravascular fluid.
- Binds and transports generally insoluble substances in the blood e.g.
bilirubin, salicylic acid, fatty acids, cortisol and other drugs.
- Binds and transports some metals such as Calcium and Magnesium.
- Carries various substances throughout your body, including hormones,
vitamins, and enzymes.
- Low albumin levels can indicate a problem with your liver or kidneys.
OTHER PROTEINS OF IMPORTANCE
Myoglobin
• Myoglobin is the primary oxygen-carrying protein found in striated skeletal and cardiac muscles.
• When striated muscle is damaged, myoglobin is released, elevating the blood levels.
• In an acute myocardial infarction (AMI), this increase is seen within 2-3 hours of onset and reaches peak
concentration in 8-12 hours.
• For the diagnosis of AMI, serum myoglobin should be measured serially. If a repeated myoglobin level
doubles within 1-2 hours after the initial value, it is highly diagnostic of an AMI.
Troponin
• is a complex of three regulatory proteins (cTnC, cTnT and cTnI).
• It is found in the heart and not normally found in the blood.
• When heart muscle becomes damaged, troponin sent into blood stream, as heart damage increases, greater
amounts of troponin are released in the blood.
• Troponin T and Troponin I have a very high specificity for cardiac injury.
• They are released early (2-4 hr) with peak at (10-24 hr) and can persist for up to 7 days.
• Their testing is primarily used as a tool to diagnose myocardial infarction (MI). - Elevated levels suggest MI or
other form of cardiac damage.
• All non NPN (Urea, Creatinine, uric acid and ammonia) are high in plasma in renal 3- Uric Acid:
impairment; referred to as azotemia. • End product of purine metabolism.
• Best laboratory evaluation when renal impairment is suspected is globular filtration • The levels of uric acid in the blood increases:
rate (GFR). - Too much production of uric acid.
• Creatinine clearance evaluate GFR (More sensitive than BUN or creatinine). - The body is unable to get rid of excess uric acid.
• Increased uric acid: in gout, renal failure and chemotherapy
• eGFR (estimated glomerular filtration rate). treatment.
• more sensitive than creatinine clearance and use measured serum creatinine and the • Decreased uric acid: kidney disease or liver disease
patient demographic info (gender, age, race).
• 24 hrs. urine not needed.
3- Ammonia:
• Derived from action of bacteria content of colon.
1- Creatinine • Metabolized by liver normally.
• The kidneys are working on filtration of creatinine out of the blood. • Liver convert ammonia to urea for excretion.
• Creatinine exits your body as a waste product in urine. • Produced from deamination of amino aside and transported
• The methods most frequently used to measure creatinine are based on the Jaffe via blood to the liver in form of alanine and glutamine.
reaction, in this reaction, creatinine reacts with picric acid in alkaline solution to • Elevation in plasma ammonia toxic to CNS.
form a red-orange chromogen. • Hyperammonemia: seen in advanced liver disease.
• Increased serum creatinine: Renal disease and renal failure. • False high results due to failure to place specimen on ice or
incompletely filling the tube.
Creatinine + alkaline picrate → red-orange complex.
2- Urea:
• Urea is water soluble compound that could be excreted in urine by Kidneys.
• Urea is the end-product of amino acid metabolism found in proteins.
• Increased urea: Renal failure, glomerular nephritis, urinary tract obstruction.
• Decreased urea: Severe liver disease, vomiting, diarrhea, malnutrition.
LIVER
• The liver is the largest internal organ in the human body.
• The liver is the only organ involved in bilirubin metabolism, because
bilirubin is formed from the breakdown of old RBCs.
• Functional unit of the liver is the lobule and lobules contain two cell
types:
Hepatocytes:
- Responsible for metabolic function of the liver.
Kupffer cells:
- Are phagocytic macrophages capable of ingesting bacteria and other
foreign material.
1 – Creation of Bilirubin:
• Reticuloendothelial cells are macrophages which are responsible for the maintenance of the blood,
through the destruction of old or abnormal cells. They take up red blood cells and metabolise the
hemoglobin present into its individual components; hem and globin. Globin is further broken down
into amino acids which are subsequently recycled.
• Meanwhile, hem is broken down into iron and biliverdin, a process which is catalyzed by hem
oxygenase. The iron gets recycled, while biliverdin is reduced to create unconjugated bilirubin.
2 – Bilirubin Conjugation:
• In the bloodstream, unconjugated bilirubin binds to albumin to facilitate its transport to the liver. Once
in the liver, glucuronic acid is added to unconjugated bilirubin by the enzyme glucuronyl transferase.
• This forms conjugated bilirubin, which is soluble. This allows conjugated bilirubin to be excreted into
the duodenum in bile.
3 – Bilirubin Excretion:
• Once in the colon, colonic bacteria deconjugate bilirubin and convert it into urobilinogen.
• Around 80% of this urobilinogen is further oxidised by intestinal bacteria and converted
to stercobilin and then excreted through faeces. It is stercobilin which gives faeces their colour.
• Around 20% of the urobilinogen is reabsorbed into the bloodstream as part of the enterohepatic
circulation. It is carried to the liver where some is recycled for bile production, while a small percentage
reaches the kidneys. Here, it is oxidised further into urobilin and then excreted into the urine.
Bilirubin causes of Jaundice:
Prehepatic jaundice /hemolytic jaundice Hepatic jaundice Post hepatic jaundice / obstructive jaundice
• Caused by increased destruction of • Congenital disorders lead to: • occurs when the liver cells malfunction and
erythrocytes such as in case of hemolytic • defective uptake, reduced conjugation or cannot take up, conjugate, or secrete bilirubin
anemia, and the liver’s can not ability to impaired excretion of bilirubin. “Obstruction of biliary drainage”
conjugate bilirubin. • Generalized hepatocellular dysfunction may
• This causes an unconjugated occur in hepatitis and hepatic cirrhosis.
hyperbilirubinaemia “indirect bilirubin” this is • Drugs may cause hepatocellular damage.
not excreted by the kidney.
Specimen Collection and Storage:
• A fasting serum specimen that is neither hemolyzed no lipemic in nature is preferred.
• Prior to testing, serum should be stored in the dark and measured as soon as possible
(within 2-3 h) after collection.
• Serum may be stored in the dark in a refrigerator for up to 1 week and freezer for 3
months without any change in the bilirubin concentration.
6- Lipase:
• Found in pancreas.
• Lipase along with amylase is utilized in the diagnosis of pancreatitis.
• Lipase is more sensitive and specific than amylase as a marker of Acute pancreatitis.
• Lipase increased in pancreatitis and usually remains elevated for a longer period of
time compared to amylase.
- CKMB is used in the diagnosis of acute myocardial infarction “AMI” (CK-MB >6% of
total CK is diagnostic for AMI).
- Additionally, CK-MB has a typical rise and fall pattern after an AMI that is used in
conjunction with troponin levels to diagnose AMI.
8- Lactate Dehydrogenate “LD”:
• Found in most tissue in: Liver, heart, skeletal muscle, kidney and
erythrocytes.
• Increased in cardiac disorders (acute myocardial infarction), hepatic
diseases, skeletal muscle diseases and hemolytic disorders.
1- Cholesterol:
• Cholesterol is a major component of cellular membrane.
• Synthesis of cholesterol:
- By all cells except erythrocytes.
- Major sites of synthesis are the liver and mucosa of small intestine.
- Low-density lipoprotein (LDL) is the primary carrier of cholesterol.
- Increase hypercholesterolaemia: defects of lipid metabolism, Diabetes
mellitus 2, Hypothyroidism, Nephritic syndrome, Pregnancy.
- Decrees hypocholesterolemia: Malnutrition, Hyperthyroidism,
Macroglobulinemia (Waldenstrom disease), Polycythaemia Vera.
Specimen requirements:
• Fasting (minimum 12 hours) serum is required.
• Avoid lipemia and hemolysis.
• Avoid prolonged tourniquet application (increase in cholesterol 2-5%
per two minute application)
2- Triglycerides (TG):
• Is stored in adipose tissue.
• The small intestine synthesizes TG from digested exogenous TG (monoglycerides + diglycerides).
• The liver and the adipose tissues synthesize endogenous TG from glycerol + plasma FFa
• Chylomicrons are the major transporters of exogenous TG.
• VLDL “very-low-density lipoprotein” is the major transporter of endogenous TG.
• Increase TG: Pancreatitis, Chronic liver disease, Chronic renal disease and Pregnancy.
Lipoproteins:
• Proteins that transport Lipids.
• Large molecules of spherical micellular structure.
• Lipid transporting vehicle in blood.
• Made up of protein (apoprotein), phospholipid, TG, Cholesterol & Cholesterol ester.
Chylomicron: (largest; lowest in density due to high lipid/protein ratio; highest in triglycerides as % of weight).
formed in the intestines and transport triglycerides.
VLDL: (very low density lipoprotein: 2nd highest in triglycerides as % of weight), carries endogenous triglycerides
synthesized in the liver.
IDL: (intermediate density lipoprotein) “bad cholesterol”: result of VLDL breakdown taken to the liver then
transformed to LDL.
LDL: (low density lipoprotein): highest in cholesterol esters as % of weight), major cholesterol carrier and transports a
large amount of endogenous cholesterol and LDL more induct diagnosis for Atherosclerosis.
HDL: (high density lipoprotein) "good cholesterol”: highest in density due to high protein/lipid ratio), is synthesize
in the intestine and liver cells.
ENDOCRINOLOGY
Endocrine system
Hormones:
• Are chemical compounds that are synthesized by endocrine glands and secreted directly into
the blood, which carries them to organs and tissues of the body “target site” to exert their.
Hypothalamus
• is a part of the brain that has a vital role in controlling many bodily functions
including the release of hormones from the pituitary gland.
• is located on the undersurface of the brain.
• Called 'master gland' because it controls the activity of most other hormone-secreting • Luteinising hormone (LH) and follicle stimulating
glands. hormone (FSH):
• The pituitary gland controls metabolism, growth, sexual maturation, reproduction, - Known as gonadotrophins.
blood pressure and many other vital physical functions and processes. - They act on the ovaries or testes to stimulate sex hormone
• Produces prolactin: acts on the breasts to induce milk production. production, and egg and sperm maturity.
• Secretes hormones: that act on the adrenal glands, thyroid gland, ovaries and testes.
• Prolactin (PRL):
Adrenal Glands: - Which stimulates milk production.
- Cortisol: stimulates glycogenolysis, lipolysis, and gluconeogenesis.
- Aldosterone: controls the retention of Na + , Cl-, and H20, the • Thyroid stimulating hormone (TSH):
excretion of K+ and H+ and, therefore, the amount of fluid in the body. - Which stimulates the thyroid gland to secrete thyroid
hormones.
- Epinephrine (Adrenaline) and Norepinephrine (Noradrenaline):
Two hormones are produced by the hypothalamus and then
• Adrenocorticotropic hormone ( ACTH ): stored in the posterior pituitary gland before
- which stimulates the adrenal glands to secrete steroid hormones, principally cortisol. being secreted into the bloodstream. These are:
- High ACTH and cortisol called (Cushing syndrome).
1- Anti-diuretic hormone (ADH): (also called Vasopressin)
• Growth hormone (GH): - which controls water balance and blood Pressure.
- Which regulates growth, metabolism and body composition.
2- Oxytocin:
- Which stimulates uterine contractions during labour and
milk secretion during breastfeeding.
Thyroid gland
• The thyroid gland is part of the endocrine system and produces thyroid hormones:
Thyroxine(T4) and triiodothyronine(T3), which are important for metabolic health.
• The hypothalamus releases its own hormone thyrotropin-releasing hormone (TRH).
TRH in turn stimulates the release of TSH in the pituitary, which then signals to the
thyroid gland.
• This whole network is also referred to as the hypothalamic pituitary-thyroid axis
(HPT) and it adapts to metabolic changes and your body’s needs.
• Thyroid hormones circulate in blood bound to thyroxine-binding globulin (TBG).
• There are other hormone-producing cells within the thyroid gland called C-cells.
These cells produce Calcitonin. Calcitonin plays a role in regulating calcium and
phosphate levels in the blood
1- Insulin:
- Is released by the 'beta cells’, lower glucose levels in the bloodstream and
promote the storage of glucose in fat, muscle, liver and other body tissues.
- Hyperinsulinemia: “insulin resistance”, insulinomas (insulin-producing
tumors of the, which result in hypoglycemia.
- Hypoinsulinemia: low level of insulin or ineffective insulin, which results in
diabetes mellitus.
2- Glucagon:
- Is released by the 'Alpha cells’ , opposite effect to insulin, by helping
release energy into the bloodstream from where it is stored, thus raising
blood sugar levels.
- Stimulates the conversion of stored glycogen (stored in the liver) to
glucose, which can be released into the bloodstream, this process is called
glycogenolysis.
- High level Glucagon “Hyperglucagonemia”: associated with glucagon-secreting tumors
of the pancreas(sugar appear in urine)
2. Glucocorticoids: cortisol.
- Cortisol: helps to regulate body metabolism. Cortisol stimulates glucose production
helping the body to free up the necessary ingredients from storage (fat and muscle) to
make glucose. “stimulates glycogenolysis, lipolysis, and gluconeogenesis.”
- Disorders: Cushing's syndrome and Addison's disease.
3. Adrenal androgens:
- Male sex hormones: dehydroepiandrosterone (DHEA) and testosterone.