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Breast Cancer Classification Using DTC

This document loads breast cancer data from scikit-learn and analyzes it using a decision tree classifier. It splits the data into training and test sets, trains a decision tree model on the training set, and evaluates the model's performance on the test set. Key results include a test accuracy of 92.6% and a confusion matrix showing good recall and precision for both classes.

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tarunbinjadagi18
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17 views

Breast Cancer Classification Using DTC

This document loads breast cancer data from scikit-learn and analyzes it using a decision tree classifier. It splits the data into training and test sets, trains a decision tree model on the training set, and evaluates the model's performance on the test set. Key results include a test accuracy of 92.6% and a confusion matrix showing good recall and precision for both classes.

Uploaded by

tarunbinjadagi18
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
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Download as PDF, TXT or read online on Scribd
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In [1]: import pandas as pd

import warnings
warnings.filterwarnings('ignore')
from sklearn.datasets import load_breast_cancer
cancer_data = load_breast_cancer()

In [2]: list(cancer_data.target_names)

Out[2]: ['malignant', 'benign']

In [3]: cancer_data.feature_names

Out[3]: array(['mean radius', 'mean texture', 'mean perimeter', 'mean area',


'mean smoothness', 'mean compactness', 'mean concavity',
'mean concave points', 'mean symmetry', 'mean fractal dimension',
'radius error', 'texture error', 'perimeter error', 'area error',
'smoothness error', 'compactness error', 'concavity error',
'concave points error', 'symmetry error',
'fractal dimension error', 'worst radius', 'worst texture',
'worst perimeter', 'worst area', 'worst smoothness',
'worst compactness', 'worst concavity', 'worst concave points',
'worst symmetry', 'worst fractal dimension'], dtype='<U23')

In [4]: cancer_df = pd.DataFrame(cancer_data.data, columns=cancer_data.feature_names)


cancer_df.head()

Out[4]:
mean mean worst worst
mean mean mean mean mean mean mean mean worst worst worst worst worst worst worst worst
concave fractal ... concave fractal
radius texture perimeter area smoothness compactness concavity symmetry radius texture perimeter area smoothness compactness concavity symmetry
points dimension points dimension

0 17.99 10.38 122.80 1001.0 0.11840 0.27760 0.3001 0.14710 0.2419 0.07871 ... 25.38 17.33 184.60 2019.0 0.1622 0.6656 0.7119 0.2654 0.4601 0.11890

1 20.57 17.77 132.90 1326.0 0.08474 0.07864 0.0869 0.07017 0.1812 0.05667 ... 24.99 23.41 158.80 1956.0 0.1238 0.1866 0.2416 0.1860 0.2750 0.08902

2 19.69 21.25 130.00 1203.0 0.10960 0.15990 0.1974 0.12790 0.2069 0.05999 ... 23.57 25.53 152.50 1709.0 0.1444 0.4245 0.4504 0.2430 0.3613 0.08758

3 11.42 20.38 77.58 386.1 0.14250 0.28390 0.2414 0.10520 0.2597 0.09744 ... 14.91 26.50 98.87 567.7 0.2098 0.8663 0.6869 0.2575 0.6638 0.17300

4 20.29 14.34 135.10 1297.0 0.10030 0.13280 0.1980 0.10430 0.1809 0.05883 ... 22.54 16.67 152.20 1575.0 0.1374 0.2050 0.4000 0.1625 0.2364 0.07678

5 rows × 30 columns

In [5]: from sklearn.model_selection import train_test_split


X_train, X_test, y_train, y_test = train_test_split(cancer_df,
cancer_data.target,
test_size = 0.33,
random_state = 42)

In [6]: from sklearn.tree import DecisionTreeClassifier


from sklearn import metrics

In [7]: # Create Decision Tree classifer object


dtc = DecisionTreeClassifier()
​
# Train Decision Tree Classifer
model = dtc.fit(X_train,y_train)
​
#Predict the response for test dataset
y_pred = model.predict(X_test)

In [8]: # Model Accuracy, how often is the classifier correct?


print("Accuracy:",metrics.accuracy_score(y_test, y_pred))

Accuracy: 0.925531914893617

In [9]: from sklearn.metrics import confusion_matrix


confusion_matrix(y_test, y_pred)

Out[9]: array([[ 63, 4],


[ 10, 111]], dtype=int64)

In [10]: import matplotlib.pyplot as plt


from sklearn.metrics import plot_confusion_matrix

matrix = plot_confusion_matrix(model, X_test, y_test, cmap=plt.cm.Reds)


​

In [11]: from sklearn.metrics import classification_report


print(classification_report(y_test, y_pred))

precision recall f1-score support

0 0.85 0.91 0.88 67


1 0.95 0.91 0.93 121

accuracy 0.91 188


macro avg 0.90 0.91 0.90 188
weighted avg 0.91 0.91 0.91 188

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