3.biochemistry Samples
3.biochemistry Samples
3.biochemistry Samples
M1 T
Tyrosine Kinase
(Seta subunit)
receptor substrate
tjucose
—* eiycogen
v
synthesis
glucose » h~<o-P ump shunt
eiycdysis
J J
I A
*
Pyruvate
MAOPH
I TCP
Acetyl CoA Cycle
FA synthesis
Lipcgenesrs
vux
^lut I
glucose —>— ejut 3 — jocose glucose (o phosphate
pyruvate
Acetyl coA
atp<
TCA cycle
more -than S days without Vood intahe, all TQA stores are
depleted, Vatty acids are low.
hetone body synthesis = Decreasing.
muscle proteolysis -* Cachexia.
I
I
Brain :
a QLUTS : 6<mT I, <dmT 3 (neurons).
KB can only provide ao44 energy.
Prolonged starvation * Brain depends on hB.
Hormonal regulation.
Allosteric regulation.
Action o? glucagon •
glucagon binds to Q protein coupled receptor.
Activates Q protein.
ATP cAmP
ADP
Enzyme enzyme.
Action o? insulin s
• Activation o¥ phospho diesterase =
Converts cAmP to s’ Amp.
Insulin reduces cAmP level
• Converts enzyme into dephosphorylated state. space
Active
INTRODUCTION TO ENZYMES
Introduction 00:01:50
Simple enzyme :
• Only amino acid residues taKe part in the reaction.
Complex enzyme ;
• Amino acid residue + Chemical component is required Vor
the reaction to occur.
• Amino acid component is Known as apoenzyme.
• Hon enzyme component can be :
Inorganic molecule liKe metals : Fe^/Fe1*, Cuf*, Zna* -*
Co-Vactor.
Organic component liKe organic molecule or metallo-
organic molecule -* Co-enzyme.
5
I
Cofactor 00:21:04
metals as co-?actor ;
metalloenzyme ’•
metal is tghtiy integrated by covalent or non-covalent bonds
to the apoenzyme.
&g. : 2n in carbonic anhydrase.
Cu in tyrosinase.
MADP s
Substate
MADP+ MADPH + H*
an* + ae'
Tryptophan Hydroxylase. ~
Aromatic amino
Tyrosine Hydroxylase.
acid Hydroxylase.
Phenylalanine Hydroxylase—
1- Hydroxylase. I
Cytochromes
Cytochrome P45O and Cytochrome bS are involved in
modifying and degrading drugs.
4a. Peroxidase •
Electron acceptors *
• Ascorbate
Free radical
• Quinones.
• glutathione.
>- scavenging
• Cytochrome C.
4b. Catalase
’
Electron acceptor ; I molecule of H Oa.
AH O AH O + O .
present in Peroxisomes of :
Catalase is
mucous membrane, Kidney, Liver, Blood, Bone marrow.
Peroxisomes containing s
Catalases scavenge reactive oxygen species.
Oxidases generate reactive oxygen species.
S. Reductases =
They require MADPH.
Are involved in the reductive biosynthesis of steroids, Fatty
acids, and Cholesterol.
Other hydrolases:
Arginase.
Phosphatases.
glucose - (o - Phosphatase
glucose -(o-PO4 Qlucose
HO Pi
Aldolase :
Fructose
(oC
- I, - bis PO4
(o glyceraldehyde- 3 PO4 + DHAP
3C
- 3C
enolase :
O O"
HO
O O
H— O— OPOV
enolase
C — 0P0f
HO — OH OH.
a-Phosphoglycerate Phosphoenolpyruvate
= is Kj/mol
, , ,
-3 -
_ Phosphotriose
isomerase
Glyceraldehyde POA < > DHAP.
Qacemase :
mutase :
Intramolecular transfer o? groups 5
Phosphoglucomutase
Glucose - G - PO4 < > Glucose - I - POA.
Phosphoglycerate
mutase
3 Phosphoglycerate < phosphoglycerate
I. Carboxylase.
3. glucose - - POA
(o
* glucose - - POA.
l
Answer: Phosphoglucomutase.
A type o? isomerase: mutase.
The substrate is glucose phosphate.
4.
MAD* MADH
Acetul CoA
Pyruvate (ac).
Cao)
CDa
Answer: Pyruvate dehydrogenase.
In these reactions: MAD* -* MADH: hence the enzyme is
dehydrogenase.
The substrate is Pyruvate.
ATP ADP
Pyruvate । Oxaloacetate
(3C) Biotin (4C).
CO,
MECHANISM OF ACTION OF
ENZYMES
Activation energy :
The d^Serence between the Vree energy o¥ substrate and
the transition state.
The standard Vree energy change : Ae^
space
A^- Ae^- A^ Active
bibb’s Vree energy • Q
Catalysis by proximity.
Acid base catalysis.
Covalent catalysis,
metal ion catalysis. §
Catalysis by strain. I
I. Catalysis by proximity :
• For the reaction to occur, the reactant should come in
bond forming distance with the active site.
ENZYME KINETICS
rI
< r
a >
A +6 P + Q.
h= Rate constant o?
r a caJ ce>l r = h CA1 L61 forward reaction.
ra a CPJ Cql ra = ha CP1 CQl ha = Rate constant oV
backward reaction.
h CAM = ha CPXql
(Equilibrium constant).
hl CPXqJ
CAM)'
At x intersect, y =O
V = ax + b
J V
Optimum temperature
Temperature
H+ ion concentration 00:55:07
Optimum pH Mormal : 5 to 9.
Charged state o¥ Amino acid residues var ies with pH.
pn4 : ionization constant. pH = “Charge o? ionizable group varies’.
Intestine
Chymotrypsin : Catalytic residue : Histidine (pKa = b, active in
alhaline pH).
ENZYME INHIBITION
Case scenar io
In Hooch tragedy, many people were hospitalised, ethanol was
given as an antidote. Why?
Ans. methanol was ingested in hooch tragedy.
Alcohol dehudroaenase
methanol •
Formaldehyde > Blindness.
Ethanolcompetitively inhibits the enzyme alcohol
dehydrogenase and forms acetaldehyde which is relatively
less toxic.
Excess ethanol replaces methanol from active binding site
and prevents formation of toxic formaldehyde.
8
Substrate
Another Site i i I
Substrate
Inhibitor e-S-i Complex
Shape : Parallel.
x-intercept moves away Vrom zero.
'/-intercept increases.
&.g., Placental ALP inhibited by phenylalanine.
Case scenario =
Following a short circuit, a house was on ftre at night. In the
morning all the family members were Sound dead but none o¥
the bodies were charred, uohat is the reason behind the death
o¥ the all the family members Vollowirg a ftre?
Ans. Fire Increased carbon monoxide emission.
Examples :
• Allopurinol used Vor treatment o? gout inhibits xanthine
oxidase.
Xanthine
oxidase xO
Hypoxanthine —> xanthine > uric acid
Irreversible
inhibition
Allopurinol —^2 > Alloxanthine
Structural
analogue (Drugs)
Substrates gets converted into a transition state before
forming toe end product.
The active site o? the enzyme is complementary to this
transition state o? toe substrate.
Drugs have been developed which are structural analogues oV
transition state o? substrates.
ENZYME REGULATION
a) Heme synthesis t
Succinyl CoA + glycine
| ALA synthase
d ALA
I
Heme.
Increased heme will repress ALA synthase whereas decreased
amount o? heme will activate the enzyme.
inhibition
Activation
Protein hinose
£ - Ser - OH - O - PO^
Protein phosphatase
H o
Pi'
Protein
Kinase A
Protein
Phosphatase
—
< space
Active
glycogen phosphorylase a
(Active)
-
Qlycogen degraded
Compartmentation 00:50:22
LacWe dehudroqenase
J
Pyruvate Lactate.
Location -* Cytoplasm.
Structure Tetramer with two types o? subunits H and m.
Cased on the subunits, diVflerent isoenzymes are seen.
LOH- a. hm
% ।
Faster K6C, Kidney 3S
LOH- a. hm
a a
Fast Spleen, lungs, ao
lymph node,
leucocyte, platelet.
LOH- 4. wm
i %
SIOU) Liver, sKeletal 10
muscle (loh- 4
predominant).
LOH- S. m4 Slowest Liver, sKeletal s
muscle
• Giamma ALP :
Seen in mucosa o? intestinal cells.
elevated in ulcerative colitis.
Cleared by sinusoidal cells o? liver.
In case o? hepatitis, it will be elevated
Serum Amylase «
Mon- specie as rt is elevated in other intra-abdominal
conditions, salivary gland disorders, genitourinary
disorders lil ? ectopic pregnancy.
Lipase
’
Elevated almost 5000 times.
markers oV bone »
bone formation resorption
bone
• feeta a
microglobulin.
• Alpha a macroglobulin.
• Retinol binding protein.
• Cystatin C. space
• microalbumin.
• Osteopontin. Active
• Liver Vatty acid binding protein.
• Sodium hydrogen exchange isoVorm.
• Exosomal Vetuin.
C =0
3I
-C-OH
Straight fcCHOH
Disaccharides 00:15:44
Polysaccharides 00:21:34
j:
Homopolysaccharide
1
Heteropolysaccharide
One type of monomer > l type of monomer units.
I
glycogen ; 3
• Storage carbohydrate in humans/animals.
• made of a D glucose.
• Branched polymer.
• Favours satiety.
s
Carbohyr— Leave Feedba
Pectin : Heteropolysaccharide.
Predominantly made o? yalacturonic acid
Dextrin : Hydrolytic product o? starch.
Dextran • Polysaccharide o? a D ylucose.
• used as plasma volume expander.
• Synthetic dextran : Size exclusion chromatoyraphy.
• Dental plaque.
Isomerism in carbohydrates 00:38:34
,H-C-OH
C
L
C
L
OH H— C— OH
I ho—c—h
Ca epimer CH OH CH OH
ho-c-h HO-C-H galactose glucose
Diastereoisomers :
Difference in orientation of H and OH groups in > I carbon
atom other than the functional and penultimate carbon atom,
mannose and galactose are diastereoisomers.
GLYGOSAMINOGYCANS AND
MUCOPOLYSACCHARIDOSES
Introduction 00:00:08
Properties o¥ €\A6\S :
• Megatively charged/Polyanions.
• Form hydrogen bond with water.
• Absorb water and Vorm a hydrated gel acting as a
lubricant.
space
I.Compressibility oV cartilage. Active
a. mobility and resilience o? joints.
—
• Occupy large space > molecular seive
• Selective transport o? molecules.
Heparan SulVate :
• Present in synaptic vesicles.
• Present in the renal basement membrane making it
responsible ?or the charge selectiveness o? the
glomerular basement membrane.
• G^ives a net negative charge to the basement
membrane, therefore doesn’t let negatively charged
Albumin to pass through.
• Anchors lipoprotein Lipase to the endothelial surface.
• Acts as plasma membrane receptor.
Hepar in
• The only intracellular GA€v
• Inj. Heparin dislodges lipoprotein lipase ?rom its
anchoring site.
• Maturally occurring anticoagulant which binds to
Anti-Thrombin III.
Hyaluronic Acid.
• Mot covalently bound to protein.
• Polysaccharide.
• Mo sulVate group.
• Helps in cell migration (mound Repair,
Embryogenesis, morphogenesis, metastasis) .
Answer = mucopolysaccharidoses.
Explanation mental Retardation/ Intellectual disability.
Umbilical Hernia
Short stature.
Comeal Clouding.
Coarse Facial features frontal bossing, depressed nasal
bridge^ macroglossia
Claw hand
All o? which are features o? mPS.
Clinical scenario A :
A IG year old boy with short stature, coarse facial feature,
and nirsuitism and normal intelligence
GLUCOSE TRANSPORTERS
SGLT 00:04:28
SG\LT-l ; characteristics
• -
Sodium dependent.
• unidirectional transport.
• Secondary active transport.
• Is a symport Transports jocose along with Sodium.
High concentration
lou) concentration
-
Ping state Faces towards high concentration o? glucose and
attaches to it.
-
Pong state Faces towards the interior o¥ the plasma
membrane. Ping state conVormationallg changes to Pong state
and glucose is transported along the concentration gradient.
S - Solute concentration.
-
v Rate o? absorption o? solute.
^lu
^al
Fru
v4.0
•
Marow
6.0•
202
GLYCOSI
Active space
Glycolysis
14 Leave Feedbai
Preparatory phase »
I ATP I ADP
Fructose G phosphate
Fructose I,(a
bisphosphate
Aldolase (reversible)
PhosphoTriose
isomerase
o z x Hexohinase/olucoh 5 / \
—r glucose G phosphate
I ATP I ADP
Significance $
Fructose i,G
bisphosphate
v4.0
•
Marow
6.•0
202
Active space
14 Glycolyss Q4
Leave Feedbai
space
Active
8
I
PYRUVATE DEHYDROGENASE
S enzymes S coenzymes