Quantitative_Processing.

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Processing of Data - Basic Quantitative Calculations

First stage is adjusting the integration events (See the integration events section) and the components in the
processing method by opening a channel in the Review window and opening the specific Processing Method.
If the components are not defined yet in the Processing method, the following should be done: in the
Review window tile the Main window with the Processing method , select Process -> Integrate, go to the
Components window: To fill in the components use Option -> Fill from Results. The software automatically
enters them. Once they are in the component table their names can be edited and other parameters in the
Component Table can be entered (RT windows, Int Std as specified later on). Then select Process -> Integrate-
> Calibrate to get the results in the left window. (It is easier to tile the two windows, the Main and the
Processing Method's window in order to edit the method and see the results simultaneously). Remember to
save the method.

Once the components are assigned and registered, the peaks names appear in the chromatogram. Use the
Option-> Show Events and Show Components to be able to see them graphically on the screen.

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The Component table includes the following columns:

Name Identifies the component
Retention Time Assigns the RT +/- the RT window

RT Window The range within which the peak is identifies

Peak Match Type of match to the RT (Closest, highest, second, etc.)

Y Value Instead of just the area (% area, height, etc.)

X Value Amount or Concentration

Fit Linear, cubic, linear through zero, others.

Weighting Points in the calibration curve can be weighted (1/x, logx etc.) to emphasize
portions of the curve

Internal Std The component's name entered here will serve as the internal standard.

RT Reference The component's name entered here will serve as the RT reference for RRT.

Rel Resol Reference (SST) The component's name entered here will serve for the relative Rs.

Curve Reference The calibration curve of the component's name entered here will be used.

Relative Response The component's name entered here will serve for the relative response..

Must Yes or No. If it is a Must peak and it is missing, the result won't be produced.

Default Pk If it is a default peak, its calibration curve will be used to quantify unknowns.

Default Pk Start & End Sets the range in the chromatogram in which unknowns will by quantified using
this specific default peak.

Type Single, Timed or Named group.

CCompRef1, CCompRef2, Used for inter-peak calculations

CCompRef3
CConst1, CConst2 Used for individual peaks calculations, constant parameters can be introduced
here (such as label claim, Dissolution chamber's volume etc.).

Default Units The reported units of the final result.

Once the integration events were set appropriately, the next step is to enter the information related to the
channels, the chromatographic conditions and the quantitative parameters. This is done at the Channel window,
using the tool: Alter Sample.

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A table appears with a list of the samples. Some of the fields are editable, such as the sample name, the sample
status (Standard or Unknown), text in the custom field such as Mobile_phase and Column_type, etc. The
quantitative parameters are entered in the Sample weight and Dilution and other custom fields that were created
for custom calculations if necessary (custom fields such as Average Tablet Weight etc.)

It is extremely important to set the Sample type (Standard or Unknown) right. A channel that is defined a
Standard will be used for calibration, and a channel that is defined an Unknown will be quantified using the
calibration curve in the processing method that is used for them.

Weights or Concentrations of the standards are entered in the Amount loading table, using Edit -> Amounts.
The components names are inserted either manually or using: Edit -> Copy components from process method in
the Amounts Loading Table. The components are inserted automatically by the software in the Name column.

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It is essential that the components names will be identical to those in the processing method,
otherwise they will not be quantified. Click on the OK button and in the Alter Sample Table Select File->Save.
Once the amounts and weights and other parameters were introduced, it is time to process them manually in the
Review window of the channels, before attempting batch processing to check if everything was entered OK.

During method development the chromatograms are not routine, so it is advisable to work on them in the
Review one by one and check whether the components are registered and calculated properly. It is possible to
select a few channels together and review them using Tools -> Review, and then process them one after the
other using: Navigate -> Next 2D channel -> Integrate -> Calibrate/Quantitate in a regular 2D work or
Navigate -> Next 3D channel in PDA work (Apply Method Set is done automatically). When you see that all
the results are there, exit the Review window and use batch processing (see below).

The quantitative results will not be performed unless the following is fulfilled:
• The component name in the Amount Loading Table are identical to those in the processing method.
• The analysed peak is within the RT window range and identified
• The calibration curve was not cleared before integrating the unknowns.

Once you set the components right and the Peak table shows that they were quantified properly, you can
exit and use the Processing tool to product all the results at once. In the Channel View select the channels,
select Tools -> Process -> Use specified processing method (in 2D work) or Use specified Method set (in 3D
work). The Process tool does the following: Integrate, Calibrate (standards) or Quantitate (Unknowns), Save
result, and Save Calibration all at once.

Since the processing is done usually manually during method development, it is advisable to prepare a
special View filter in the results window. Use the filter: Results today to omit old results, by clicking "Edit
View", and filling =Today in the column Date Processed, and save it as a filter (for example: Results today). It
is also recommended to avoid producing unnecessary results to prevent confusion. You can delete results as
you wish, since they are easily reproducible.

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There are 3 sets of results in the above window from 3 different mobile phase conditions. Note that there are 5
replicates, to check the precision already at this early stage.

These sets will be selected for the reporting, using the Preview tool to see the report on the screen, or the Print
tool to print it directly to the printer (when the report templates are known and established).

The calibration curve is attached to the Processing Method or can be found at the Curves window.

The basic calculation is

AreaSmp * AmountStd * SampleWtStd * DilSmp

Amount =
AreaStd * SampleWtSmp * DilStd
Or:
Area Smp xAmount Std x ( SampleWt Std / Dil Std ) Dil Smp
Amount = x
Area Std SampleWt Smp

Concentration = Amount / Injection Volume

Note that SampleWeight and Dilution can be used as any multiplying or dividing factors as the following:

Sample Weight Dilution

Standard's Amount Multiplying factor Dividing factor

Unknown's Amount Dividing factor Multiplying factor

The calibration curves for the separate components appear in the Curves view and are
associated with the Processing Method and the results. Make sure to clear the old calibration
curve before creating a new one, because the calibration is commulative.

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