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Data Analysis course for Dhanush (9)

The document provides an introduction to R programming, covering foundational skills in data handling, visualization using ggplot2, and advanced analysis techniques. It includes topics such as manipulating data, creating and customizing plots, importing and processing NGS data, and performing gene expression analysis. Additionally, it addresses advanced statistics and machine learning applications within R programming.

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Nilarini . D
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4 views1 page

Data Analysis course for Dhanush (9)

The document provides an introduction to R programming, covering foundational skills in data handling, visualization using ggplot2, and advanced analysis techniques. It includes topics such as manipulating data, creating and customizing plots, importing and processing NGS data, and performing gene expression analysis. Additionally, it addresses advanced statistics and machine learning applications within R programming.

Uploaded by

Nilarini . D
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd
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Introduction to R Programming

Objective: Provide foundational knowledge of R programming and essential data-handling skills

 R Basics and Data Handling


 Basic Operations in R and Data Entry

 Manipulating Data

 Data Visualization in R
 Data Visualization with ggplot2

 Introduction to ggplot2 and Creating Basic Plots

 Understanding ggplot2, creating bar plots, box plots, scatter plots

 Enhancing, Customizing, Saving, and Exporting Plots


 Adding titles, labels, changing colors, and adjusting scales

 Saving and Exporting Plots

 Saving plots in various formats for publication or presentation

 NGS Data Import and Basic Processing


 Working with NGS Data

 Introduction to NGS Data Formats and Importing Data

 Understanding NGS data, common file formats (e.g., FASTQ, BAM), and importing data into R.

 Preprocessing NGS Data for Analysis

 Basic data cleaning and preprocessing steps (e.g., filtering out low-quality reads)

 Exploratory Data Analysis for Gene Expression Data

 Visualizing gene expression distributions, checking for outliers, data normalization

Gene Expression Analysis in R

 Advanced Analysis Techniques


 Differential Expression Analysis: Understanding differential expression, performing analysis using
example datasets

 Functional Enrichment and Pathway Analysis: Introduction to functional analysis, identifying enriched
pathways in gene sets

 Statistics and Machine Learning using R Programming


 Programming with R

 Advance Statistics

 Data Mining

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