1 Biopharmaceutical
1 Biopharmaceutical
1 Biopharmaceutical
Biopharmaceuticals
Introduction
• Biopharmaceuticals are medical drugs produced using
biotechnology.
• They are proteins (including antibodies), nucleic acids (DNA,RNA
or antisense oligonucleotides) used for therapeutic or in vivo
diagnostic purposes, and are produced by means other than direct
extraction from a native (non-engineered) biological source.
• The first such substance approved for therapeutic use was
biosynthetic 'human' insulin made via recombinant DNA
technology.
• Sometimes referred to as rHI, under the trade name Humulin, was
developed by Genentech, but licensed to Eli Lily and Company,
who manufactured and marketed the product starting in 1982.
Biotherapeutic Agents
• Virtually all biotherapeutic agents in clinical use are
biotech pharmaceuticals
• A biotech pharmaceutical is simply any medically
useful drug whose manufacture involves
microorganisms or substances that living organisms
produce (e.g., enzymes).
• Most biotech pharmaceuticals are recombinant—that
is, produced by genetic engineering
Biopharmaceutical Categories
• Biopharmaceuticals can be grouped into six categories.
– Cytokines
– Enzymes
– Hormones
– Clotting Factors
– Vaccines
– Monoclonal Antibodies
Cytokines
• Cytokines - Cytokines are hormone-like molecules
that can control reactions between cells. They activate
immune-system cells such as lymphocytes and
macrophages.
– Interferon - potent glycoprotein cytokine that act
against viruses and uncontrolled cell proliferation
– Interleukins function as messengers for various
steps in the immune process. Ex. interleukin-2 (IL-
2) stimulates T lymphocytes, a recombinant variant
of IL-2, aldesleukin (Proleukin), for treating renal
cell carcinoma. IL-3 stimulates bone marrow stem
cells. IL-1 secreted by macrophages induces fever.
Cytokines
• Cytokines
– Granulocyte-colony stimulating factor (G-CSF)
stimulates the bone marrow to produce neutrophils
(antibacterial leukocytes), used for cancer treatments
that are immunodepressants
– Granulocyte-macrophage colony-stimulating factor
(GM-CSF) stimulates the bone marrow to produce
neutrophils and macrophages. For chemo and radio
therapy that suppresses bone marrow function
Enzymes
• Enzymes – are complex proteins that cause a
specific chemical change in other substances
without being changed themselves.
– Alteplase – dissolves blood clots
– Dornase alfa – a recombinant DNAse I that digests
DNA in the mucous secretions in lungs
– Imiglucerase. A recombinant glucocereborsidase for
Gaucher’s disease (bone destruction and
enlargement of the liver and spleen)
Other Biopharmaceutical categories
• Facts
– Peak production during adolescence
– 60 year old secretes 25% of a 20 year old
– Anterior lobe of the pituitary gland
– Primarily released in pulses during beginning phases of sleep
– Converted in the liver into insulin-Like Growth Factor type I
– Incidence: 1 out of 4,000 to 10,000 births
Human Growth Hormone
• Also known as
somatotropin
• Most abundant
hormone secreted by
the pituitary gland
The Pituitary gland is a small, pea-sized gland that is located in the middle
of your skull, just below the hypothalamus.
Pituitary Gland
• The pituitary gland has two lobes, anterior
and posterior
• The anterior lobe also produces
– Prolactin – breast milk
– FSH, LS – sexual reproduction
– Thyrotropin – thyroid function
– Adrenocorticotropin - adrenal function
– Growth Hormone - growth
Human Growth Hormone
• Usually the first hormone to be lost or
reduced
• Can be congenital
• Can be acquired
– Inflammation
– Surgery
– Radiation
– Autoimmune disease
– Tumors
Human Growth Hormone
• 191 amino acid (approx. 22 kdal)
• Appears to be 5 variants of the gene on chromosome 17
• Takes 80 cadavers for one year’s worth of therapy
• Creutzfeldt -Jacob syndrome (odds – 1:500)
Protein Pharmaceuticals
• Natural sources are often rare and expensive
– Difficult to keep up with demand
– Hard to isolate product
– Lead to immune reactions (diff. species)
– Viral & pathogen contamination
protein
Recombinant Protein Expression
Systems
• Escherichia coli
• Other bacteria Polyhedra
• Pichia pastoris
• Other yeast
• Baculovirus
• Animal cell culture
• Plants
• Sheep/cows/humans
Expression System Selection
• Choice depends on size and character of protein
– Large proteins (>100 kD)? Choose eukaryote
– Small proteins (<30 kD)? Choose prokaryote
– Glycosylation essential? Choose baculovirus or
mammalian cell culture
– High yields, low cost? Choose E. coli
– Post-translational modifications essential? Choose
yeast, baculovirus or other eukaryote
Which Vector?
• Must be compatible with host cell system (prokaryotic vectors for
prokaryotic cells, eukaryotic vectors for eukaryotic cells)
• Needs a good combination of
– strong promoters
– ribosome binding sites
– termination sequences
– affinity tag or solubilization sequences
– multi-enzyme restriction site
Plasmids and Vectors
• Circular pieces of DNA ranging in size from
1000 to 10,000 bases
• Able to independently replicate and typically
code for 1-10 genes
• Often derived from bacterial “mini”
chromosomes (used in bacterial sex)
• May exist as single copies or dozens of copies
(often used to transfer antibiotic resistance)
Key Parts to a Vector
• Origin of replication (ORI) – DNA sequence for DNA
polymerase to replicate the plasmid
• Selectable marker (Amp or Tet) – a gene, when
expressed on plasmid will allow host cells to survive
• Inducible promoter – Short DNA sequence which
enhances expression of adjacent gene
• Multi-cloning site (MCS) – Short DNA sequence that
contains many restriction enzyme sites
A Generic Vector
Which Vector?
• Promoters
– arabinose systems (pBAD), phage T7 (pET), Trc/Tac
promoters, phage lambda PL or PR
• Tags
– His6 for metal affinity chromatography (Ni)
– FLAG epitope tage DYKDDDDK
– CBP- calmodulin binding peptide (26 residues)
– E-coil/K-coil tags (poly E35 or poly K35)
– c-myc epitope tag EQKLISEEDL
– Glutathione-S-transferase (GST) tags
– Celluluose binding domain (CBD) tags
Gene Introduction (Bacteria)
Bacterial Transformation
Bacterial Transformation
• Moves the plasmid into bacterial host
• Essential to making the gene “actively” express the
protein inside the cell
• 2 routes of transformation
– CaCl2 + cold shock
– Electroporation
• Typical transformation rate is 1 in 10,000 cells (not very
efficient) for CaCl2, but 1 in 100 for electroporation
Electroporator
25 microfarads = 2500 V
@ 200 ohms for 5 ms
Electroporation
• Seems to cause disruption in
cell membrane
• Reconstitution of membrane
leads to large pores which
allow DNA molecules to
enter
• Works for bacteria, yeast and
animal cells
Bacterial Systems
Advantages Disadvantages
• Grow quickly (8 hrs to • Difficulty expressing
produce protein) large proteins (>50 kD)
• High yields (50-500 • No glycosylation or
mg/L) signal peptide removal
• Low cost of media • Eukaryotic proteins are
(simple media sometimes toxic
constituents) • Can’t handle S-S rich
• Low fermentor costs proteins
Cloning & Transforming in
Yeast Cells
Pichia pastoris
Pichia Pastoris
• Yeast are single celled eukaryotes
• Behave like bacteria, but have key advantages
of eukaryotes
• P. pastoris is a methylotrophic yeast that can
use methanol as its sole carbon source (using
alcohol oxidase)
• Has a very strong promoter for the alcohol
oxidase (AOX) gene (~30% of protein produced
when induced)
Pichia Cloning
Pichia Pastoris Cloning
• Uses a special plasmid that works both in E. coli and
Yeast
• Once gene of interest is inserted into this plasmid, it
must be linearized (cut open so it isn’t circular)
• Double cross-over recombination event occurs to cause
the gene of interest to insert directly into P. pastoris
chromosome where the old AOX gene used to be
• Now gene of interest is under control of the powerful
AOX promoter
Pichia Systems
Advantages More advantages
• Grow quickly (8 hrs to • Can express large
produce protein) proteins (>50 kD)
• Very high yields (50- • Glycosylation & signal
5000 mg/L) peptide removal
• Low cost of media • Has chaperonins to help
(simple media fold “tough” prtns
constituents) • Can handle S-S rich
• Low fermentor costs proteins
Baculovirus Expression
• Baculoviruses are rod-shaped dsDNA viruses found mainly in insects. The most
common baculovirus used for expression studies is Autographa californica multiple
nuclear polyhedrosis virus, which relies on the lepidopteran species Spodoptera
frugiperda and Trichoplusia ni as host insects.
• AcMNPV particles surround themselves with a protective matrix consisting of the
protein polyhedrin, which permits survival in the environment and efficient spread
to new hosts.
• Under the control of the extremely strong promoter pPolh, polyhedrin is expressed
at extremely high levels (up to 50% of all cellular protein) at the end of the
baculovirus life cycle.
• The baculovirus expression system makes use of the fact that in cell culture a
polyhedrin coat is not essential for virus propagation and thus heterologous proteins
can be expressed under the control of the pPolh promoter.
• Autographica californica multiple nuclear polyhedrosis virus (Baculoviurs)
• Virus commonly infects insects cells of the alfalfa looper (small beetle) or
armyworms (and their larvae)
• Uses super-strong promoter from the polyhedron coat protein to enhance
expression of proteins while virus resides inside the insect cell
Baculovirus Expression
Baculovirus Expression
~12 days
Baculovirus Successes
• Alpha and beta interferon
• Adenosine deaminase
• Erythropoietin
• Interleukin 2
• Poliovirus proteins
• Tissue plamsinogen activator (TPA)
Baculovirus Systems
Disadvantages Advantages
• Grow very slowly (10-12 • Can express large proteins
days for set-up) (>50 kD)
• Cell culture is only • Correct glycosylation &
sustainable for 4-5 days signal peptide removal
• Set-up is time consuming, • Has chaperonins to help fold
not as simple as yeast “tough” prtns
• Very high yields, cheap
Mammalian Expression
Systems
Mammalian Cell-line Expression
• Sometimes required for difficult-to-express proteins or
for “complete authenticity” (matching glycosylation and
sequence)
• Cells are typically derived from the Chinese Hamster
Ovary (CHO) cell line
• Vectors usually use SV-40 virus, vaccinia virus
promoters and DHFR (dihydrofolate reductase) as the
selectable marker gene
Mammalian Expression
• Gene initially cloned and plasmid propagated in bacterial
cells
• Mammalian cells transformed by electroporation (with
linear plasmid) and gene integrates (1 or more times)
into random locations within different CHO chromosomes
• Multiple rounds of growth and selection using
methotrexate to select for those cells with highest
expression & integration of DHFR and the gene of
interest
Methotrexate (MTX) Selection
Gene of interest DHFR
Transfect
Dfhr - cells
Foreign gene
expressed in
high level in
CHO cells
Mammalian Systems
Disadvantages Advantages
• Selection takes time • Can express large
(weeks for set-up) proteins (>50 kD)
• Cell culture is only • Correct glycosylation &
sustainable for limited signal peptide removal,
period of time generates authentic
• Set-up is very time proteins
consuming, costly, • Has chaperonins to help
modest yields fold “tough” prtns
Mammalian Cell Successes
• Factor IX
• Factor VIII
• Gamma interferon
• Interleukin 2
• Human growth hormone
• Tissue plamsinogen activator (TPA)
Conclusion
• Isolation of gene of interest
• Introduction of gene to expression vector
• Transformation into host cells
• Growth of cells through fermentation
• Isolation & purification of protein
• Formulation of protein product
What About the Term
Genetic Engineering?
Isolating genes
Modifying genes so they function better
Preparing genes to be inserted into a new species
Developing transgenes
What is a transgenic?
Poor Quality
• FlavrSavr tomatoes (Calgene)
Disease Treatment
Diagnostics
Environmental Cleanup
Human Applications
Human Applications
• Pharmaceutical products
New solutions to old problems
• Disease diagnosis
Determine what disease you have or may get
• Gene therapy
Correcting disease by introducing a corrective
gene
Biotechnology and Health
Product Use
Insulin Diabetes
Interferon Cancer
Interleukin Cancer
Human growth hormone Dwarfism
Neuroactive proteins Pain
• Breeding
Crossing two individuals from the same species;
produces a new, improved variety;
Source: USDA not a biotechnology procedure
• Transformation
Adding a gene from another species; the
essential biotechnology procedure to produce
transgenics
Source: USDA
Interspecific Cross
Wheat Rye
Triticale
New species, but
NOT biotechnology
products
Mutagenesis
Mutagenesis
Treatment
Susceptible
Normal
Gene
ATTCGA
Resistant
Mutant
Gene
ATTGGA
The Roundup Ready Story
X
Plant
EPSP synthase
X
X
Aromatic
amino acids
Roundup Resistant Plants
Shikimic acid + Phosphoenol pyruvate
+ Glyphosate
RoundUp has no effect;
Bacterial enzyme is resistant to herbicide
EPSP synthase
Aromatic
amino acids
The Golden Rice Story
Geranylgeranyl diphosphate
Phytoene synthase
Phytoene
Problem: Phytoene desaturase
Rice lacks
these enzymes ξ-carotene desaturase
Lycopene
Lycopene-beta-cyclase
Normal
Vitamin A -carotene
“Deficient” (vitamin A precursor)
Rice
The Golden Rice Solution
-Carotene Pathway Genes Added
IPP
Geranylgeranyl diphosphate
Phytoene
Vitamin A
Phytoene desaturase
Pathway Single bacterial gene;
is complete performs both functions
and functional ξ-carotene desaturase
Lycopene
Daffodil gene Lycopene-beta-cyclase
Golden -carotene
Rice (vitamin A precursor)
Introducing the Gene
or
Developing Transgenics
Steps
Contains
1. Gene of interest
• The coding region and its controlling elements
2. Selectable marker
• Distinguishes transformed/untransformed plants
3. Insertion sequences
• Aids Agrobacterium insertion
Transformation Steps
Introduce DNA
• Agrobacterium or gene gun
• Agrobacterium
Tissue culture
• Gene Gun required to generate
transgenic plants
The Lab Steps
The Next Test Is The Field
Herbicide Resistance
Non- transgenics
Transgenics
Final Test of the Transgenic
Consumer Acceptance
Before After
• In nature, plant cells often live in close association with
certain bacteria, which may provide a convenient vehicle
for introducing cloned DNA into plants.
• Agrobacterium tumefaciens, for example, attaches to the
cells of dicotledonous plants and causes the formation of
plant tumours known as galls.
• This bacterium introduces a circular DNA molecule called
the Ti (tumour -inducing) plasmid into the plant cell in a
manner similar to bacterial conjugation.
• The plasmid DNA then recombines with the plant DNA.
Since the Ti plasmid has been isolated, new genes can be
inserted into it using recombinant DNA techniques and
the Ti genes causing tumours can be disrupted.
• The resulting recombinant plasmid can then transfer desired genes into
plant cells.
An especially useful characteristic of plants for transgenic studies is the
ability of cultured plant cells to give rise to mature plants.
• Meristemativ (growing) cells from dissected plant tissue or cells within
excised parts of a plant will grow in culture to form callus tissue, an
undifferntiated lump of cells.
• Under the influence of plant growth hormones, different plant parts (roots,
stems, and leaves) develop from the callus and eventually grow into whole
fertile plants.
• When an agrobacterium containing a recombinant Ti plasmid infects a
cultured plant cell, the newly incorporated foreign gene is carried into the
plant genome.
• A. tumefaciens readily infects dicots (petunia, tobacco, carrot) but not
monocots; reliable techniques for introducing genes into monocots are still
being developed.
• Direct introduction of DNA by electroporation has been successful in rice
plants, (which are monocots), and the future looks bright for the
manipulation of other commercially important monocotyledonous crop
plants.
• Also available for gene transfer experiments are cells of a tiny, rapidly
growing member of the mustard family called Arabidopsis thaliana.
• This plant appears to be well suited to genetic analysis of a variety of
developmental and physiological processes.
• It takes up little space, is easy to grow, and has a small genome, and genes
defined by mutations can be cloned by positional cloning strategies.
• A transgenic animal is one that carries a foreign gene that has
been deliberately inserted into its genome. The foreign gene is
constructed using recombinant DNA methodology. In addition
to a structural gene, the DNA usually includes other
sequences to enable it
• to be incorporated into the DNA of the host and
• to be expressed correctly by the cells of the host.
• Transgenic sheep and goats have been produced that express
foreign proteins in their milk.
• Transgenic chickens are now able to synthesize human
proteins in the "white" of the eggs.
• These animals should eventually prove to be valuable sources
of proteins for human therapy.
• To date, there are three basic methods of producing
transgenic animals:
• DNA microinjection
• Retrovirus-mediated gene transfer
• Embryonic stem cell-mediated gene transfer
• 1. DNA Microinjection
• The mouse was the first animal to undergo successful gene
transfer using DNA microinjection. This method involves:
• transfer of a desired gene construct (of a single gene or a
combination of genes that are recombined and then cloned)
from another member of the same species or from a different
species into the pronucleus of a reproductive cell
• the manipulated cell, which first must be cultured in vitro (in a
lab, not in a live animal) to develop to a specific embryonic
phase, is then transferred to the recipient female
• 2. Retrovirus-Mediated Gene Transfer
• The second method produces chimeras, altered animals with mixed
DNA.
• A retrovirus is a virus that carries its genetic material in the form of
RNA rather than DNA. This method involves
• retroviruses used as vectors to transfer genetic material into the
host cell, resulting in a chimera, an organism consisting of tissues or
parts of diverse genetic constitution
• chimeras are inbred for as many as 20 generations until
homozygous (carrying the desired transgene in every cell)
transgenic offspring are born
• The method was successfully used in 1974 when a simian virus was
inserted into mice embryos, resulting in mice carrying this DNA.
• 3. Embryonic Stem Cell-Mediated Gene Transfer
• The presence of transgenes can be tested at the embryonic
state in this third method.
• This method involves:
• isolation of totipotent stem cells (stem cells that can develop
into any type of specialized cell) from embryos
• the desired gene is inserted into these cells
• cells containing the desired DNA are incorporated into the
host’s embryo, resulting in a chimeric animal
• Unlike the other two methods, which require live transgenic
offspring to test for the presence of the desired transgene, this
method allows testing for transgenes at the cell stage.
Medical Applications
• Transplant organs may soon come from transgenic animals.
• a) xenotransplantation
Patients die every year for lack of a replacement heart, liver,
or kidney. For example, about 5,000 organs are needed each
year in the United Kingdom alone.
• Transgenic pigs may provide the transplant organs needed to
alleviate the shortfall.
• Currently, xenotransplantation is hampered by a pig protein
that can cause donor rejection but research is underway to
remove the pig protein and replace it with a human protein.
• Milk-producing transgenic animals are especially useful for
medicines.
• b) nutritional supplements and pharmaceuticals
Products such as insulin, growth hormone, and blood anti-clotting factors
may soon be or have already been obtained from the milk of transgenic
cows, sheep, or goats.
• Research is also underway to manufacture milk through transgenesis for
treatment of debilitating diseases such as phenylketonuria (PKU),
hereditary emphysema, and cystic fibrosis.
• In 1997, the first transgenic cow, Rosie, produced human protein-enriched
milk at 2.4 grams per litre. This transgenic milk is a more nutritionally
balanced product than natural bovine milk and could be given to babies or
the elderly with special nutritional or digestive needs. Rosie’s milk
contains the human gene alpha-lactalbumin.
• A transgenic cow exists that produces a substance to help human red cells
grow.
• c) human gene therapy
Human gene therapy involves adding a normal copy of a gene
(transgene) to the genome of a person carrying defective
copies of the gene. The potential for treatments for the 5,000
named genetic diseases is huge and transgenic animals could
play a role. For example, the A. I. Virtanen Institute in Finland
produced a calf with a gene that makes the substance that
promotes the growth of red cells in humans.
What are the ethical concerns surrounding transgenesis?
• These ethical issues, better served in their own article, include questions
such as:
• Ethical concerns must be addressed as the technology grows, including the
issue of lab animal welfare.
• Should there be universal protocols for transgenesis?
• Should such protocols demand that only the most promising research be
permitted?
• Is human welfare the only consideration? What about the welfare of other
life forms?
• Should scientists focus on in vitro (cultured in a lab) transgenic methods
rather than, or before, using live animals to alleviate animal suffering?
• Will transgenic animals radically change the direction of evolution, which
may result in drastic consequences for nature and humans alike?
• Should patents be allowed on transgenic animals, which may hamper the
free exchange of scientific research?