Bio CR Final
Bio CR Final
Bio CR Final
AND ARTIFACTS
Dr. B.Leela Kumari
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CONTENTS-1
Introduction to Bio Medical signals
Classification of signals and noise
Spectral analysis
Biomedical systems
Biomedical Signal Acquisition
Biomedical Signal Analysis Techniques
Biomedical Signal Processing
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CONTENTS-2
Characteristics of EEG
Analysis of EEG signals
Characteristics of ECG
Analysis of ECG signals
Classification of Artefacts
Artefacts removal techniques
Conclusions
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The Nature of Biomedical Signals
• The living organism made up of many
component system and each system is made
up of several subsystems that carry on many
physiological processes.
• Nervous system
• Cardiovascular system
• Musculoskeletal system
• Each system carries on many physiological
processes
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• Most physiological processes are accompanied
by or manifest themselves as signals that
reflect their nature and activities.
– Signals: biochemical, electrical, physical
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• The types of biomedical signals
Biochemical
• Hormones
• Neurotransmitters
Electrical
• Potential
• Current
Physical
• Pressure
• Temperature
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Introduction
What is a signal?
Signal is a time varying physical phenomen on which is
intended to convey information.
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Noise is also a signal, but the information
conveyed by noise is unwanted hence it is
considered as undesirable.
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• Examples of signal include:
• Electrical signals
– Voltages and currents in a circuit
• Acoustic signals
– Acoustic pressure (sound) over time
• Mechanical signals
– Velocity of a car over time
• Video signals
-Intensity level of a pixel (camera, video) over time
• Bio medical Signals
- ECG, EMG etc
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Introduction to Biomedical Signals
• What is bio signal?
Any signal transduced from a biological or
medical source could be called a bio signal.
• Examples:electrocardiogram (ECG)
electroencephalogram (EEG)
electroneurogram (ENG)
electromyogram (EMG)
electroretinogram (ERG)
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Sensing of Biological Signals
• The signals can be sensed by qualitative or
quantitative manner.
• Measurement
– Scalar
– Function of time
• discrete x[n]
• continuous x(f)
• digital
– Multivariant vector
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• Diseases or defects in a biological system
cause alteration its normal physiological
processes, leading to pathological processes.
• A pathological process is typicaaly associated
with signals that are different in some respects
from the corresponding normal signals.
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Temperature and Blood Pressure can be representated in
the following ways
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• biomedical signals are primarily acquired for
monitoring (detecting or estimating)
• In some cases of basic research, they are also
used for decoding and eventual modeling of
specific biological systems.
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• The major objectives of biomedical instrumentation and
signal analysis are:
• Information gathering — measurement of phenomena to
interpret a system.
• Diagnosis — detection of malfunction, pathology, or
abnormality.
• Monitoring — obtaining continuous or periodic information
about a system.
• Therapy and control — modification of the behavior of a
system based upon the outcome of the activities listed above
to ensure a specific result.
• Evaluation — objective analysis to determine the ability to
meet functional requirements, obtain proof of performance,
perform quality control, or quantify the effect of treatment.
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CLASSIFICATIONS OF SIGNALS AND NOISE
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• Deterministic signals can be totally described by explicit
mathematical relationships.
• Examples of this type are ECG or single-fiber EMG signals
in noise.
• A combination of several unrelated periodic signals
creates an “almost” periodic
signal.
• Any discontinuity and sudden change in a
deterministic signal is regarded as a transient.
Mathematically speaking, a transient
signal is represented by infinite number of sinusoids in
frequency domain.
• any signal expressible as a finite number of sinusoids can
be defined as a steady-state
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• Random signals cannot be exactly expressed.
• It varies extraneous and it is no longer
repeatable.
• It can be described only in terms of probabilities
and statistical averages.
• A stationary process is a stochastic process whose
statistical properties are not a function
of time.
• A non-stationary process is a signal whose statistical
properties vary with time.
• Examples of this type include EEGs, EMGs, field
potentials from the brain, and R-R intervals from
ECGs.
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• Fractal Signals
• Fractal signals and patterns in general are self-
replicating, which means that they look similar at
different levels of magnification.
• They are therefore scale-invariant.
• There is evidence to suggest that heart rate variability
is fractal in nature.
• The branching of the airway into bronchioles seems to
have a self-replicating nature that is characteristic of a
fractal.
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• Chaotic Signals
Chaotic signals are neither periodic nor
stochastic, which makes them very difficult to
predict beyond a short time into the future.
The difficulty in prediction is due to their
extreme sensitivity to initial conditions,
characteristic of these nonlinear systems.
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Examples of Biomedical signals
• body temperature as a signal is a rather simple
example of a biomedical signal. Regardless of
its simplicity, we can appreciate its importance
and value in the assessment of the well-being
of a child with a fever or that of a critically
ill patient in a hospital.
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The action potential (AP):
• the basic component of all bioelectrical signals
provides information on the nature of
physiological activity at the single-cell level.
• is the electrical signal that accompanies the
mechanical contraction of a single cell when
stimulated by an electrical current (neural or
external) .
• An excited cell displaying an action potential is
called depolarized caused by the flow of
sodium (Na), potassium (K), chloride (Cl-), and
other ions across the cell membrane.
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• Recording an action potential requires the
isolation of a single cell, and microelectrodes
with tips of the order of a few micrometers to
stimulate the cell and record the response
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• The electroneurogram (ENG)
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• The electrocardiogram (ECG)
• The ECG is the electrical manifestation of the contractile
activity of the heart, and
• can be recorded fairly easily with surface electrodes on the
limbs or chest.
• The rhythm of the heart in terms of beats per minute {bpm)
may be easily estimated by counting the readily identifiable
waves.
• More important is the fact that the ECG waveshape is
altered by cardiovascular diseases and abnormalities such as
myocardial
ischemia and infarction, ventricular hypertrophy, and
conduction problems.
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• The electroencephalogram (EEG)
The EEG (popularly known as brain waves)
represents the electrical activity of the brain
• EEG signals are used to study the nervous system,
monitoring of sleep stages, biofeedback and control,
and diagnosis of diseases such as epilepsy
• Special EEG techniques include the use of needle
electrodes, naso-pharyngeal electrodes, recording
the electrocorticogram (ECoG) from an exposed part
of the cortex, and the use of intracerebral electrodes.
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• EEG signals exhibit several patterns of rhythmic
or periodic activity.
• The commonly used terms for EEG frequency
bands are:
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• Event-related potentials (ERPs)
•
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The electrogastrogram (EGG)
• The electrical activity of the stomach
• consists of rhythmic waves of depolarization and
repolarization of its constituent smooth muscle cells .
• External (cutaneous) electrodes can record the signal
known as the electrogastrogram (EGG)
• Accurate and reliable measurement of the electrical
activity of the stomach requires implantation of
electrodes within the stomach which limits its
practical applicability
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• The phonocardiogram (PCG)
The heart sound signal is perhaps the most traditional
biomedical signal, as indicated by the fact that the
stethoscope is the primary instrument earned and used by
physicians.
• The PCG is a vibration or sound signal related to the
contractile activity of the cardiohemic system (the heart and
blood together and represents a recording of the heart
sound signal.
• The normal heart sounds provide an indication of the general
state of the heart in terms of rhythm and contractility
• Cardiovascular diseases and defects cause changes or
additional sounds and murmurs that could be useful in their
diagnosis.
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• normal cardiac cycle contains two major sounds —
the first heart sound (SI) and the second heart sound
(S2). Figure shows a normal PCG signal, along with
the ECG and carotid pulse tracings. S1 occurs at the
onset of ventricular contraction, and corresponds in
timing to the QRS complex in the ECG signal
• PCG signals are normally recorded using piezoelectric
contact sensors that are sensitive to displacement or
acceleration at the skin surface.
• PCG recording is normally performed in a quiet room,
with the patient in the supine position with the head
resting on a pillow.
• The PCG transducer is placed firmly on the desired
position on the chest using a suction ring and/or a
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Three-channel simultaneous record of the PCG, ECG, and carotid pulse signals
of a normal male adult.
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• The carotid pulse (CP)
The carotid pulse is a pressure signal recorded over the
carotid artery as it passes near the surface of the body at
the neck.
• It provides a pulse signal indicating the variations in
arterial blood pressure and volume with each heart beat.
Because of the proximity of the recording site to the heart,
the carotid pulse signal closely resembles the morphology
of the pressure signal at the root of the aorta;
• however, it cannot be used to measure absolute pressure
• The carotid pulse is a useful adjunct to the
PCG and can assist in the identification of S2 and its
components.
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• Placement of the carotid pulse transducer
requires careful selection of a location on the
neck as close to the carotid artery as possible,
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• Signals from catheter-tip sensors
For very specific and close monitoring of
cardiac function, sensors placed on catheter
tips may be inserted into the cardiac
chambers. It then becomes possible to acquire
several signals such as left ventricular
pressure, right atrial pressure, aortic (AO)
pressure, and intracardiac sounds
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• The speech signal
• Human beings are social creatures by nature, and have an
innate need to communicate. We are endowed with the
most sophisticated vocal system in nature
– more commonly considered as a communication
signal than a biomedical signal. However, the speech signal can
serve as a diagnostic signal when speech and vocal-tract
disorders need to be investigated
.
• Speech sounds are produced by transmitting puffs of air
from the lungs through the vocal tract (as well as the
nasal tract for certain sounds)
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• The vocal tract starts at the vocal cords or glottis in the
throat and ends at the lips and the nostrils. The shape
of the vocal tract is varied to produce different types of
sound units or phonemes which, when concatenated, form
speech. In essence, the vocal tract acts as a filter
that modulates the spectral characteristics of the input puffs
of air. It is evident that the system is dynamic, and that the
filter, and therefore the speech signal produced, have time-
varying characteristics, that is, they are nonstationary
•
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• The vibromyogram (VMG)
– The VMG is the direct mechanical manifestation of contraction of a
skeletal muscle,
– is a vibration signal that accompanies the EMG.
– Also named as sound-, acoustic-, or phono-myogram
– Muscle sounds or vibrations are related to the change in
dimensions of the constituent muscle fibers
– Recorded by contact microphones or accelerometers
– The VMG, along with the EMG, may be useful in studies related to
neuromuscular control, muscle contraction, athletic training, and
biofeedback.
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• The vibroarthrogram (VAG)
•
The VAG is the vibration signal recorded from a joint during
movement (articulation) of the joint.
• Normal joint surfaces are smooth and produce little or no sound,
whereas joints affected by osteoarthritis and other degenerative
diseases may have suffered cartilage loss and produce grinding
sounds.
• Detection of knee-joint problems via the analysis of VAG signals
could help avoid unnecessary exploratory surgery, and also aid
better selection of patients who would benefit from surgery
• The VAG signal, however, is not yet well understood, and is a
difficult signal to analyze due to its complex nonstationary
characteristics.
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• Oto-acoustic emission signals
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• The OAE signal could provide objective
information on the micromechanical activity of the
preneural or sensory components
of the cochlea that are distal to the nerve-fiber endings.
• Analysis of the OAE signal
could lead to improved noninvasive investigative
techniques to study the auditory
system. The signal may also assist in screening of hearing
function and in the
diagnosis of hearing impairment.
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Biomedical signal acquisition
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two most important components In signal
acquisition are
preamplifier and
Filter
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Signal Acquisition Stages
• acquisition typically consists of three stages:
i. transduction, (Transducers)
ii. analog conditioning, and (Amplifiers & Filters)
iii. analog-to-digital conversion.(Samplers)
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Signal Acqusition Procedures
Invasive
– placement of transducers or other devices inside the body
Noninvasive
– minimize risk
– surface electrodes
Active
– require external stimuli
Passive
– not require external stimuli
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What is the need of biomedical signals?
Monitoring
modeling of specific biological systems
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What is the necessity of Processing Bio signals?
Analysis of Noise
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What is the roll of Engineers?
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Analysis of signals
The analysis of signals is a fundamental problem for
many engineers and scientists.
Analysis of Signals:
1. Time Domain Analysis,
2. frequency Domain Analysis and
3. modal domains.
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What is a System?
System is a device or combination of devices,
which can operate on signals and produces
corresponding response. Input to a system is
called as excitation and output from it is called
as response.
For one or more inputs, the system can have
one or more outputs.
Example: Communication System
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Adaptive systems
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• There are various medical systems, which
provides online information about the patient
condition and after processing displays the
result on the screen, like
– Physiotrace and
– Boom-NT.
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• Physiotrace: This is a real time toolkit for
biomedical data acquisition, centralization,
processing and visualization. This toolkit
composed of both hardware and software
modules, allows users to model , test and
perform all king of digital signal processing al
• Boom-NT: It provides the capability to model,
simulate and perform various strategies of
signal processing using a graphical user
interface.
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• Rehabilitate systems provides Human computer interface.
• These systems differentiate between the various
commands on the basis of amplitude thresholds and
performing power spectral density estimations on discrete
windows of data.
• This provides an affordable DSP-based system, when
combined with the screen keyboard, enables the disabled
user to fully operate a computer without using any
extremities.
• Products : EMG-controlled telephone interface to be used
by disabled telephone operators, The robotics
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The Components of Human-Instrument
System
The components
• The subject or patient
• Stimulus or procedure of activity
• Transducers
– electrodes, sensors
• Signal-conditioning equipment
– amplifier, filter
• Display equipment
– oscilloscopes, strip charts, computer monitors etc.
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• Recording, data processing, and transmission
equipment
– Analog instrumentation tape recorders, analog-to-
digital converters (ADCs), digital-to-analog
converters (DACs), digital tapes, CDs, computers,
telemetry systems etc.
• Control devices
– Power supply, isolation equipment, patient
intervention systems
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Properties of Biomedical Instruments
Isolation of the subject or patient
Range of operation
– The minimum to maximum values of the signal being
measured.
Sensitivity
– the smallest signal variation measurable (resolution)
Linearity
Hysteresis
– a lag in measurement due to the direction of variation
of the entity being measured.
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Frequency response
– represents of the variation of the sensitivity with
frequency
Stability
– an unstable system could preclude repeatability and
consistency of measurements
Signal to noise Ratio (SNR)
– noises could compromise the quality of the signal being
acquired.
Accuracy
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Biomedical Signal Processing
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Stages in biomedical signal processing
Signal processing selectively eliminates information
More often than not, a signal conveys irrelevant
information as well as the information of interest.
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• The goal of data acquisition is to capture the signal and
encode in a form suitable for computer processing.
• The goal of signal conditioning is to eliminate or reduce
extraneous components such as noise from the signal.
• Feature extraction means identifying and measuring a
small number of parameters or features that best
characterize the information of interest in a signal.
• hypothesis testing is particularly important in clinical
applications where a course of action has to be taken.
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General measurement and diagnostic system
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• consists of two substantial building units for
data acquisition and data processing.
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Computer Aided Diagnosis and Therapy
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Why the CAD Systems are Used?
Humans are highy skilled and fast in analysis
of visual patterns and waveforms, but are slow
in arithmetic operations with large numbers of
values.
Humans could be affected by fatigue,
boredom and enviromental factors.
Computers are inanimate but mathematically
accurate and consistent machines can be
designed to perform repetitive tasks.
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• Analysis by humans is usually subjective and
qualitative.
• Analysis by humans is subject inter-observers
and intra-observers variation with time.
• The biomedical signals are fairly slow
therefore these can be analised on-line by
low-end computers.
• Off-line analysis by the stored data.
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Difficulties and challenges of Biomedical
Signal Processing
• Accessibility of the variables to measurement
• Variability of the signal source
• Inter-relationship and interactions among
physiological systems
• Effect of the instrumentation or procedure on the
system
• Physiological artifacts and interference
• Energy limitation
• Patient safety
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EEG SIGNALS
Characteristics of the EEG
The frequency of EEG signals range from 0.01 Hz to around
100 Hz, which can be divided into five frequency bands, and
four basic types
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Analysis
• One major theory of emotions proposes that
EEG can be used to categorize a basic set of
human emotions
• Each emotion is distinct from other emotions
as perceived from its psychological and
physiological manifestations
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• Analysis
• EEG signals were analyzed from two
perspectives.
• The first was based on emotion theory and classification
• The second was statistical analysis to calculate the mean
for the extracted alpha, beta and gamma brain signals.
• The ECG signal was analyzed in the time
domain. We applied a special filter first and
then calculated the heart rate.
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Emotion analysis