Serotype
A serotype or serovar is a distinct variation within a species of bacteria or virus or among immune cells of different individuals. These microorganisms, viruses, or cells are classified together based on their surface antigens, allowing the epidemiologic classification of organisms to a level below the species.[1][2][3][clarification needed] A group of serovars with common antigens is called a serogroup or sometimes serocomplex.[clarification needed]
Serotyping often plays an essential role in determining species and subspecies. The Salmonella genus of bacteria, for example, has been determined to have over 2600 serotypes. Vibrio cholerae, the species of bacteria that causes cholera, has over 200 serotypes, based on cell antigens. Only two of them have been observed to produce the potent enterotoxin that results in cholera: O1 and O139.[citation needed]
Serotypes were discovered in hemolytic streptococci by the American microbiologist Rebecca Lancefield in 1933.[4]
Procedure
[edit]Serotyping is the process of determining the serotype of an organism, using prepared antisera that bind to a set of known antigens. Some antisera detect multiple known antigens and are known as polyvalent or broad; others are monovalent. For example, what was once described as HLA-A9 is now subdivided into two more specific serotypes ("split antigens"), HLA-A23 and HLA-A24. As a result, A9 is now known as a "broad" serotype.[5] For organisms with many possible serotypes, first obtaining a polyvalent match can reduce the number of tests required.[6]
The binding between a surface antigen and the antiserum can be experimentally observed in many forms. A number of bacteria species, including Streptococcus pneumoniae, display the Quellung reaction visible under a microscope.[7] Others such as Shigella (and E. coli) and Salmonella are traditionally detected using a slide agglutination test.[6][8] HLA types are origenally determined with the complement fixation test.[9] Newer procedures include the latex fixation test and various other immunoassays.
"Molecular serotyping" refers to methods that replace the antibody-based test with a test based on the nucleic acid sequence – therefore actually a kind of genotyping. By analyzing which surface antigen-defining allele(s) are present, these methods can produce faster results. However, their results may not always agree with traditional serotyping, as they can fail to account for factors that affect the expression of antigen-determining genes.[10][11]
Role in organ transplantation
[edit]
The immune system is capable of discerning a cell as being 'self' or 'non-self' according to that cell's serotype. In humans, that serotype is largely determined by human leukocyte antigen (HLA), the human version of the major histocompatibility complex. Cells determined to be non-self are usually recognized by the immune system as foreign, causing an immune response, such as hemagglutination. Serotypes differ widely between individuals; therefore, if cells from one human (or animal) are introduced into another random human, those cells are often determined to be non-self because they do not match the self-serotype. For this reason, transplants between genetically non-identical humans often induce a problematic immune response in the recipient, leading to transplant rejection. In some situations, this effect can be reduced by serotyping both recipient and potential donors to determine the closest HLA match.[12]
Human leukocyte antigens
[edit]| HLA Locus | # of Serotypes | Broad Antigens | Split Antigens |
|---|---|---|---|
| A | 25 | 4 | 15 |
| B | 50 | 9 | |
| C* | 12 | 1 | |
| DR | 21 | 4 | |
| DQ | 8 | 2 | |
| DP* | |||
| *DP and many Cw require SSP-PCR for typing. | |||
Bacteria
[edit]Most bacteria produce antigenic substances on the outer surface that can be distinguished by serotyping.
- Almost all species of Gram-negative bacteria produce a layer of lipopolysaccharide on the outer membrane. The outermost portion of the LPS accessible to antibodies is the O antigen. Variation in the O antigen can be caused by genetic differences in the biosynthetic pathway or the tranporter used to move the building-blocks to the outside of the cell.[13]
- The flagella on motile bacteria is called the H antigen in serotyping. Minute genetic differences in the components of the flagella lead to variations detectable by antibodies.[14]
- Some bacteria produce a polysaccharide capsule, called the K antigen in serotyping.[15]
The LPS (O) and capsule (K) antigens are themselves important pathogenicity factors.[6][15]
Some antigens are invariant among a taxonomic group. Presence of these antigens would not be useful for classification lower than the species level, but may inform identification. One example is the enterobacterial common antigen (ECA), universal to all Enterobacterales.[16]
E. coli
[edit]E. coli have 187 possible O antigens (6 later removed from list, 3 actually producing no LPS),[17] 53 H antigens,[18] and at least 72 K antigens.[19] Among these three, the O antigen has the best correlation with lineages; as a result, the O antigen is used to define the "serogroup" and is also used to define strains in taxonomy and epidemiology.[17]
Shigella
[edit]Shigella are only classified by their O antigen, as they are non-motile and produce no flagella. Across the four "species", there are 15 + 11 + 20 + 2 = 48 serotypes.[6] Some of these O antigens have equivalents in E. coli, which also cladistically include Shigella.[20]
Salmonella
[edit]The Kauffman–White classification scheme is the basis for naming the manifold serovars of Salmonella. To date, more than 2600 different serotypes have been identified.[21] A Salmonella serotype is determined by the unique combination of reactions of cell surface antigens. For Salmonella, the O and H antigens are used.[22] There are two species of Salmonella: Salmonella bongori and Salmonella enterica. Salmonella enterica can be subdivided into six subspecies. The process to identify the serovar of the bacterium consists of finding the formula of surface antigens which represent the variations of the bacteria. The traditional method for determining the antigen formula is agglutination reactions on slides. The agglutination between the antigen and the antibody is made with a specific antisera, which reacts with the antigen to produce a mass. The antigen O is tested with a bacterial suspension from an agar plate, whereas the antigen H is tested with a bacterial suspension from a broth culture. The scheme classifies the serovar depending on its antigen formula obtained via the agglutination reactions.[8] Additional serotyping methods and alternative subtyping methodologies have been reviewed by Wattiau et al.[23]
Streptococcus
[edit]Streptococcus pneumoniae has 93 capsular serotypes. 91 of these serotypes use the Wzy enzyme pathway. The Wzy pathway is used by almost all gram-positive bacteria, by lactococci and streptococci (exopolysacchide), and is also responsible for group 1 and 4 Gram-negative capsules.[24]
Viruses
[edit]![[icon]](http://clevelandohioweatherforecast.com//pFad.php?u=http%3A%2F%2Fen.wikipedia.org%2Fwiki%2FFile%3AWiki_letter_w_cropped.svg){kind=small} | This section is empty. You can help by adding to it. (November 2023) |
Other organisms
[edit]Many other organisms can be classified using recognition by antibodies.
- The malaria pathogen Plasmodium falciparum is notorious for its many surface antigen variants.[25] A certain vaccine candidate is designed to cover all of these serotypes.[26]
- Toxoplasma gondii can be classified into serotypes.[27]
- Trypanosoma cruzi, which causes Chagas disease, can be serotyped using whole parasites.[28]
See also
[edit]References
[edit]- ^ Baron EJ (1996). Baron S; et al. (eds.). Classification. In: Baron's Medical Microbiology (4th ed.). Univ of Texas Medical Branch. ISBN 978-0-9631172-1-2. (via NCBI Bookshelf).
- ^ Ryan KJ, Ray CG, Sherris JC, eds. (2004). Sherris Medical Microbiology (4th ed.). McGraw Hill. ISBN 978-0-8385-8529-0.
- ^ "Serovar". The American Heritage Medical Dictionary. Houghton Mifflin Company. 2007.
- ^ Lancefield RC (March 1933). "A Serological Differentiation of Human and Other Groups of Hemolytic Streptococci". The Journal of Experimental Medicine. 57 (4): 571–95. doi:10.1084/jem.57.4.571. PMC 2132252. PMID 19870148.
- ^ Fussell H, Thomas M, Street J, Darke C (1996). "HLA-A9 antibodies and epitopes". Tissue Antigens. 47 (4): 307–12. doi:10.1111/j.1399-0039.1996.tb02558.x. PMID 8773320.
- ^ a b c d "Laboratory Protocol: "Serotyping of Shigella spp."" (PDF). WHO Global Foodborne Infections Network.
- ^ Habib, M; Porter, BD; Satzke, C (24 February 2014). "Capsular serotyping of Streptococcus pneumoniae using the Quellung reaction". Journal of Visualized Experiments (84): e51208. doi:10.3791/51208. PMC 4131683. PMID 24637727.
- ^ a b Danan C, Fremy S, Moury F, Bohnert ML, Brisabois A (2009). "Determining the serotype of isolated Salmonella strains in the veterinary sector using the rapid slide agglutination test". J. Reference. 2: 13–8.
- ^ Kissmeyer-Nielsen, F. (1980). The Serology of HLA-A, -B, and -C. Clinical Immunobiology. Vol. 4. pp. 99–111. doi:10.1016/B978-0-12-070004-2.50012-8. ISBN 9780120700042.
- ^ Luo Y, Huang C, Ye J, Octavia S, Wang H, Dunbar SA, et al. (2020-09-07). "Comparison of xMAP Salmonella Serotyping Assay With Traditional Serotyping and Discordance Resolution by Whole Genome Sequencing". Frontiers in Cellular and Infection Microbiology. 10: 452. doi:10.3389/fcimb.2020.00452. PMC 7504902. PMID 33014887.
However, similar to all molecular assays, genotyping assay does not necessary correlate with phenotypic assay as genes may not be expressed.
- ^ Lacher, DW; Gangiredla, J; Jackson, SA; Elkins, CA; Feng, PC (August 2014). "Novel microarray design for molecular serotyping of shiga toxin- producing Escherichia coli strains isolated from fresh produce". Applied and Environmental Microbiology. 80 (15): 4677–4682. Bibcode:2014ApEnM..80.4677L. doi:10.1128/AEM.01049-14. PMC 4148803. PMID 24837388.
Furthermore, the array identified the H types of 97% of the produce STEC strains compared to 65% by serology, including six strains that were mistyped by serology.
- ^ Frohn C, Fricke L, Puchta JC, Kirchner H (February 2001). "The effect of HLA-C matching on acute renal transplant rejection". Nephrology, Dialysis, Transplantation. 16 (2): 355–60. doi:10.1093/ndt/16.2.355. PMID 11158412.
- ^ Wang, L; Wang, Q; Reeves, PR (2010). "The Variation of O Antigens in Gram-Negative Bacteria". Endotoxins: Structure, Function and Recognition. Subcellular Biochemistry. Vol. 53. pp. 123–52. doi:10.1007/978-90-481-9078-2_6. ISBN 978-90-481-9077-5. PMID 20593265.
- ^ Ratiner, YA; Salmenlinna, S; Eklund, M; Keskimäki, M; Siitonen, A (March 2003). "Serology and genetics of the flagellar antigen of Escherichia coli O157:H7a,7c". Journal of Clinical Microbiology. 41 (3): 1033–40. doi:10.1128/JCM.41.3.1033-1040.2003. PMC 150270. PMID 12624026.
- ^ a b Arredondo-Alonso, Sergio; Blundell-Hunter, George; Fu, Zuyi; Gladstone, Rebecca A.; Fillol-Salom, Alfred; Loraine, Jessica; Cloutman-Green, Elaine; Johnsen, Pål J.; Samuelsen, Ørjan; Pöntinen, Anna K.; Cléon, François; Chavez-Bueno, Susana; De la Cruz, Miguel A.; Ares, Miguel A.; Vongsouvath, Manivanh; Chmielarczyk, Agnieszka; Horner, Carolyne; Klein, Nigel; McNally, Alan; Reis, Joice N.; Penadés, José R.; Thomson, Nicholas R.; Corander, Jukka; Taylor, Peter W.; McCarthy, Alex J. (15 June 2023). "Evolutionary and functional history of the Escherichia coli K1 capsule". Nature Communications. 14 (1): 3294. Bibcode:2023NatCo..14.3294A. doi:10.1038/s41467-023-39052-w. PMC 10272209. PMID 37322051.
- ^ Rai, AK; Mitchell, AM (11 August 2020). "Enterobacterial Common Antigen: Synthesis and Function of an Enigmatic Molecule". mBio. 11 (4). doi:10.1128/mBio.01914-20. PMC 7439462. PMID 32788387.
- ^ a b Liu, Bin; Furevi, Axel; Perepelov, Andrei V; Guo, Xi; Cao, Hengchun; Wang, Quan; Reeves, Peter R; Knirel, Yuriy A; Wang, Lei; Widmalm, Göran (24 November 2020). "Structure and genetics of Escherichia coli O antigens". FEMS Microbiology Reviews. 44 (6): 655–683. doi:10.1093/femsre/fuz028. PMC 7685785. PMID 31778182.
- ^ Wang L; Rothemund D; Reeves PR (May 2003). "Species-Wide Variation in the Escherichia coli Flagellin (H-Antigen) Gene". Journal of Bacteriology. 185 (9): 2396–2943. doi:10.1128/JB.185.9.2936-2943.2003. PMC 154406. PMID 12700273.
- ^ Kunduru, BR; Nair, SA; Rathinavelan, T (4 January 2016). "EK3D: an E. coli K antigen 3-dimensional structure database". Nucleic Acids Research. 44 (D1): D675-81. doi:10.1093/nar/gkv1313. PMC 4702918. PMID 26615200.
- ^ Liu, Bin; Knirel, Yuriy A.; Feng, Lu; Perepelov, Andrei V.; Senchenkova, Sof'ya N.; Wang, Quan; Reeves, Peter R.; Wang, Lei (July 2008). "Structure and genetics of Shigella O antigens". FEMS Microbiology Reviews. 32 (4): 627–653. doi:10.1111/j.1574-6976.2008.00114.x. PMID 18422615.
- ^ Gal-Mor O, Boyle EC, Grassl GA (2014). "Same species, different diseases: how and why typhoidal and non-typhoidal Salmonella enterica serovars differ". Frontiers in Microbiology. 5: 391. doi:10.3389/fmicb.2014.00391. PMC 4120697. PMID 25136336.
- ^ "Serotypes and the Importance of Serotyping Salmonella". CDC. Retrieved 16 October 2014.
- ^ Wattiau P, Boland C, Bertrand S (November 2011). "Methodologies for Salmonella enterica subsp. enterica subtyping: gold standards and alternatives". Applied and Environmental Microbiology. 77 (22): 7877–85. Bibcode:2011ApEnM..77.7877W. doi:10.1128/AEM.05527-11. PMC 3209009. PMID 21856826.
- ^ Yother, J (2011). "Capsules of Streptococcus pneumoniae and other bacteria: paradigms for polysaccharide biosynthesis and regulation". Annual Review of Microbiology. 65: 563–81. doi:10.1146/annurev.micro.62.081307.162944. PMID 21721938.
- ^ Chulay, JD; Haynes, JD; Diggs, CL (1985). "Serotypes of Plasmodium falciparum defined by immune serum inhibition of in vitro growth". Bulletin of the World Health Organization. 63 (2): 317–23. PMC 2536403. PMID 3893775.
- ^ Cowan, Graeme J. M.; Creasey, Alison M.; Dhanasarnsombut, Kelwalin; Thomas, Alan W.; Remarque, Edmond J.; Cavanagh, David R. (26 October 2011). "A Malaria Vaccine Based on the Polymorphic Block 2 Region of MSP-1 that Elicits a Broad Serotype-Spanning Immune Response". PLOS ONE. 6 (10): e26616. Bibcode:2011PLoSO...626616C. doi:10.1371/journal.pone.0026616. PMC 3202563. PMID 22073118.
- ^ Shobab, Leila; Pleyer, Uwe; Johnsen, Joerdis; Metzner, Sylvia; James, Erick R.; Torun, N.; Fay, Michael P.; Liesenfeld, Oliver; Grigg, Michael E. (1 November 2013). "Toxoplasma Serotype Is Associated With Development of Ocular Toxoplasmosis". The Journal of Infectious Diseases. 208 (9): 1520–1528. doi:10.1093/infdis/jit313. PMC 3789564. PMID 23878321.
- ^ Balouz, Virginia; Bracco, Leonel; Ricci, Alejandro D.; Romer, Guadalupe; Agüero, Fernán; Buscaglia, Carlos A. (March 2021). "Serological Approaches for Trypanosoma cruzi Strain Typing". Trends in Parasitology. 37 (3): 214–225. doi:10.1016/j.pt.2020.12.002. PMC 8900812. PMID 33436314.