Raise warning limit for tile numbers. Fixes #112

Some of the larger illumina flowcells might now be exceeding the 1000 tile limit (largest we've seen is 936 but we don't run all possible flowcells) so let's give this some headroom.
s-andrews · Feb 1, 2023 · fed8b53 · fed8b53
1 parent 838d8cc
commit fed8b53
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/uk/ac/babraham/FastQC/Modules/PerTileQualityScores.java b/uk/ac/babraham/FastQC/Modules/PerTileQualityScores.java
@@ -281,10 +281,10 @@ else if (splitID.length >=5) {
 
 		if (! perTileQualityCounts.containsKey(tile)) {
 
-			if (perTileQualityCounts.size() > 1000) {
+			if (perTileQualityCounts.size() > 2500) {
 				// There are too many tiles, so we're probably parsing this wrong.
 				// Let's give up
-				System.err.println("Too many tiles (>1000) so giving up trying to do per-tile qualities since we're probably parsing the file wrongly");
+				System.err.println("Too many tiles (>2500) so giving up trying to do per-tile qualities since we're probably parsing the file wrongly");
 				ignoreInReport = true;
 				perTileQualityCounts.clear();
 				return;