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  Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression

  • Suhaida A. Selamat,
  • Brian S. Chung,
  • Luc Girard,
  • Wei Zhang,
  • Ying Zhang,
  • Mihaela Campan,
  • Kimberly D. Siegmund,
  • Michael N. Koss,
  • Jeffrey A. Hagen,
  • Wan L. Lam,
  • Stephen Lam,
  • Adi F. Gazdar,
  • and Ite A. Laird-Offringa

  Genome Res. July 2012 22: 1197-1211; Published in Advance May 21, 2012, doi:10.1101/gr.132662.111
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  Reorganization of the host epigenome by a viral oncogene

  • Roberto Ferrari,
  • Trent Su,
  • Bing Li,
  • Giancarlo Bonora,
  • Amit Oberai,
  • Yvonne Chan,
  • Rajkumar Sasidharan,
  • Arnold J. Berk,
  • Matteo Pellegrini,
  • and Siavash K. Kurdistani

  Genome Res. July 2012 22: 1212-1221; Published in Advance April 12, 2012, doi:10.1101/gr.132308.111
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  The human phosphotyrosine signaling network: Evolution and hotspots of hijacking in cancer

  • Lei Li,
  • Chabane Tibiche,
  • Cong Fu,
  • Tomonori Kaneko,
  • Michael F. Moran,
  • Martin R. Schiller,
  • Shawn Shun-Cheng Li,
  • and Edwin Wang

  Genome Res. July 2012 22: 1222-1230; Published in Advance December 22, 2011, doi:10.1101/gr.128819.111
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  Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts

  • Milana Frenkel-Morgenstern,
  • Vincent Lacroix,
  • Iakes Ezkurdia,
  • Yishai Levin,
  • Alexandra Gabashvili,
  • Jaime Prilusky,
  • Angela del Pozo,
  • Michael Tress,
  • Rory Johnson,
  • Roderic Guigo,
  • and Alfonso Valencia

  Genome Res. July 2012 22: 1231-1242; Published in Advance May 15, 2012, doi:10.1101/gr.130062.111
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  Impact of microRNA regulation on variation in human gene expression

  • Jian Lu and
  • Andrew G. Clark

  Genome Res. July 2012 22: 1243-1254; Published in Advance March 28, 2012, doi:10.1101/gr.132514.111
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  Disentangling the relationship between sex-biased gene expression and X-linkage

  • Richard P. Meisel,
  • John H. Malone,
  • and Andrew G. Clark

  Genome Res. July 2012 22: 1255-1265; Published in Advance April 12, 2012, doi:10.1101/gr.132100.111
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  Deep sequencing the circadian and diurnal transcriptome of Drosophila brain

  • Michael E. Hughes,
  • Gregory R. Grant,
  • Christina Paquin,
  • Jack Qian,
  • and Michael N. Nitabach

  Genome Res. July 2012 22: 1266-1281; Published in Advance April 3, 2012, doi:10.1101/gr.128876.111
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  Multidimensional regulation of gene expression in the C. elegans embryo

  • John Isaac Murray,
  • Thomas J. Boyle,
  • Elicia Preston,
  • Dionne Vafeados,
  • Barbara Mericle,
  • Peter Weisdepp,
  • Zhongying Zhao,
  • Zhirong Bao,
  • Max Boeck,
  • and Robert H. Waterston

  Genome Res. July 2012 22: 1282-1294; Published in Advance April 16, 2012, doi:10.1101/gr.131920.111
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  Physical tethering and volume exclusion determine higher-order genome organization in budding yeast

  • Harianto Tjong,
  • Ke Gong,
  • Lin Chen,
  • and Frank Alber

  Genome Res. July 2012 22: 1295-1305; Published in Advance May 22, 2012, doi:10.1101/gr.129437.111
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  Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana

  • Eric J. Belfield,
  • Xiangchao Gan,
  • Aziz Mithani,
  • Carly Brown,
  • Caifu Jiang,
  • Keara Franklin,
  • Elizabeth Alvey,
  • Anjar Wibowo,
  • Marko Jung,
  • Kit Bailey,
  • Sharan Kalwani,
  • Jiannis Ragoussis,
  • Richard Mott,
  • and Nicholas P. Harberd

  Genome Res. July 2012 22: 1306-1315; Published in Advance April 12, 2012, doi:10.1101/gr.131474.111
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