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  1. plasmidID plasmidID Public

    PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

    Shell 40 9

  2. viralrecon viralrecon Public

    Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    Nextflow 1 4

  3. iskylims iskylims Public

    is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

    Python 74 38

  4. buisciii-tools buisciii-tools Public

    set of helper tools for bu-isciii management of its core services portfolio.

    Python 2 14

  5. BU-ISCIII BU-ISCIII Public

    Our Wiki and main public documentation repository.

    4 9

  6. taranys taranys Public

    cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

    Jupyter Notebook 9 4

Repositories

Showing 10 of 71 repositories
  • node-pathogens-portal Public Forked from ScilifelabDataCentre/node-pathogens-portal

    A minimal/example hugo site for node pathogens portal. Checkout the demo site following the URL below

    BU-ISCIII/node-pathogens-portal’s past year of commit activity
    0 MIT 2 0 0 Updated May 21, 2025
  • relecov-tools Public

    set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload to public databases, as well as analysis runs and database storage.

    BU-ISCIII/relecov-tools’s past year of commit activity
    Python 6 GPL-3.0 26 26 3 Updated May 21, 2025
  • buisciii-tools Public

    set of helper tools for bu-isciii management of its core services portfolio.

    BU-ISCIII/buisciii-tools’s past year of commit activity
    Python 2 GPL-3.0 14 19 1 Updated May 21, 2025
  • iskylims Public

    is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

    BU-ISCIII/iskylims’s past year of commit activity
    Python 74 GPL-3.0 38 19 2 Updated May 20, 2025
  • relecov-platform Public

    genomic surveillance web platform for respiratory viruses used by RELECOV network in Spain

    BU-ISCIII/relecov-platform’s past year of commit activity
    Python 1 GPL-3.0 7 17 2 Updated May 20, 2025
  • BU-ISCIII/pdn_priority_pathogens’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 9, 2025
  • BU-ISCIII Public

    Our Wiki and main public documentation repository.

    BU-ISCIII/BU-ISCIII’s past year of commit activity
    4 9 2 0 Updated May 7, 2025
  • infectious-diseases-toolkit Public Forked from elixir-europe/infectious-diseases-toolkit

    Infectious diseases toolkit

    BU-ISCIII/infectious-diseases-toolkit’s past year of commit activity
    Python 1 42 0 0 Updated Apr 22, 2025
  • virology_training Public

    This repo contains all the resources needed to follow the virology training to analyze viral sequencing data.

    BU-ISCIII/virology_training’s past year of commit activity
    HTML 4 3 0 0 Updated Apr 9, 2025
  • viralrecon Public Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    BU-ISCIII/viralrecon’s past year of commit activity
    Nextflow 1 MIT 128 0 0 Updated Apr 7, 2025

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