Skip to content
@BaderLab

Bader Lab, University of Toronto

Popular repositories Loading

  1. saber saber Public

    Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work in progress. Many things are broken, and the codebase is not…

    Python 102 17

  2. CellAnnotationTutorial CellAnnotationTutorial Public

    Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods

    HTML 89 26

  3. Cytoscape_workflows Cytoscape_workflows Public

    collection of notebooks with different cytoscape workflows

    HTML 49 36

  4. scClustViz scClustViz Public

    Explore and share your scRNAseq clustering results

    R 47 9

  5. Transfer-Learning-BNER-Bioinformatics-2018 Transfer-Learning-BNER-Bioinformatics-2018 Public

    This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical named entity recognition with neural networks.

    Python 36 6

  6. Biomedical-Corpora Biomedical-Corpora Public

    A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in biomedical text-mining and information extraction.

    36 4

Repositories

Showing 10 of 91 repositories
  • FLASHMM Public

    Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models

    BaderLab/FLASHMM’s past year of commit activity
    R 1 0 1 0 Updated Jan 26, 2025
  • BaderLab/Lineage_Theory’s past year of commit activity
    0 0 0 0 Updated Jan 21, 2025
  • cy3d-impl Public

    3D Graph Renderer for Cytoscape using OpenGL

    BaderLab/cy3d-impl’s past year of commit activity
    Java 9 1 6 0 Updated Jan 9, 2025
  • AutoAnnotateApp Public

    The AutoAnnotate Cytoscape App finds clusters of nodes and visually annotates them with semantic labels and groups.

    BaderLab/AutoAnnotateApp’s past year of commit activity
    Java 7 LGPL-2.1 1 20 3 Updated Jan 6, 2025
  • sciRED Public
    BaderLab/sciRED’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jan 3, 2025
  • BaderLab/MALAT1_threshold’s past year of commit activity
    R 11 MIT 3 0 0 Updated Dec 17, 2024
  • FLASH-MM Public

    Fast and scalable LMM estimation algorithm for differential expression (DE) analysis of scRNA-seq

    BaderLab/FLASH-MM’s past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 28, 2024
  • CBW_Pathways_2024_asynchronous Public Forked from BaderLab/CBW_Pathways_2024

    CBW Asynchronous Pathway and Network Analysis Bookdown for November 2024

    BaderLab/CBW_Pathways_2024_asynchronous’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 6 0 0 Updated Nov 19, 2024
  • APA-Net Public
    BaderLab/APA-Net’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 14, 2024
  • BaderLab/EnrichmentMap_monthlyGenesetBuild’s past year of commit activity
    Java 2 0 9 0 Updated Nov 5, 2024
pFad - Phonifier reborn

Pfad - The Proxy pFad of © 2024 Garber Painting. All rights reserved.

Note: This service is not intended for secure transactions such as banking, social media, email, or purchasing. Use at your own risk. We assume no liability whatsoever for broken pages.


Alternative Proxies:

Alternative Proxy

pFad Proxy

pFad v3 Proxy

pFad v4 Proxy