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CellAnnotationTutorial
CellAnnotationTutorial PublicAccompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
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Cytoscape_workflows
Cytoscape_workflows Publiccollection of notebooks with different cytoscape workflows
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Transfer-Learning-BNER-Bioinformatics-2018
Transfer-Learning-BNER-Bioinformatics-2018 PublicThis repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical named entity recognition with neural networks.
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Biomedical-Corpora
Biomedical-Corpora PublicA collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in biomedical text-mining and information extraction.
Repositories
- GenomeAnnotationTutorial Public
A tutorial on how to annotate and interpret novel mammalian reference genomes
BaderLab/GenomeAnnotationTutorial’s past year of commit activity - GSEA_vs_fGSEA Public Forked from risserlin/CBW_pathways_workshop_R_notebooks
compare results from GSEA and fGSEA
BaderLab/GSEA_vs_fGSEA’s past year of commit activity - MALAT1_threshold Public
BaderLab/MALAT1_threshold’s past year of commit activity - FLASH-MM-analysis Public
Analysis scripts for benchmarking FLASH-MM and applying it to case-control and cell-type-specific comparisons in scRNA-seq datasets.
BaderLab/FLASH-MM-analysis’s past year of commit activity - Lineage_Theory Public
BaderLab/Lineage_Theory’s past year of commit activity