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@Bio2Byte

Bio2Byte

We research the relation between protein sequence and biophysical behavior.

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  1. simsapiper simsapiper Public

    A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural information from online resources automatically

    Python 11 1

  2. public_notebooks public_notebooks Public

    Repository of Jupyter Notebooks created by the Bio2Byte group

    Jupyter Notebook 9

  3. constava constava Public

    Constava analyzes conformational ensembles calculating conformational state propensities and conformational state variability.

    Python 1

  4. Scop3P-notebooks Scop3P-notebooks Public

    Jupyter notebook examples of SCOP3P REST API services

    Jupyter Notebook 1 1

  5. bio2byte-peptidebuilder bio2byte-peptidebuilder Public

    Forked from clauswilke/PeptideBuilder

    A simple Python library to generate model peptides (incl. capping groups and modified residues)

    Python 1

  6. bio2byte-mdutils bio2byte-mdutils Public

    Templates and analysis scripts for MD simulations of post-translationally modified peptides

    Jupyter Notebook 1

Repositories

Showing 10 of 19 repositories
  • simsapiper Public

    A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural information from online resources automatically

    Bio2Byte/simsapiper’s past year of commit activity
    Python 11 GPL-3.0 1 0 0 Updated May 21, 2025
  • GPCRchimeraDB Public

    Repository of the database GPCRchimeraDB: description at the sequence, structural and biophyiscal level of chimeric and natural GPCRs

    Bio2Byte/GPCRchimeraDB’s past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 0 0 Updated Apr 23, 2025
  • gpcrchimeradb-docs Public Forked from readthedocs/tutorial-template

    Read the Docs for GPCRchimeraDB

    Bio2Byte/gpcrchimeradb-docs’s past year of commit activity
    0 1,593 0 0 Updated Apr 23, 2025
  • public_notebooks Public

    Repository of Jupyter Notebooks created by the Bio2Byte group

    Bio2Byte/public_notebooks’s past year of commit activity
    Jupyter Notebook 9 0 0 0 Updated Apr 9, 2025
  • parrot-mps Public Forked from idptools/parrot

    Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic applications.

    Bio2Byte/parrot-mps’s past year of commit activity
    Python 0 MIT 2 0 1 Updated Jan 3, 2025
  • nf-b2btools-shiftcrypt Public

    Nextflow pipeline to predict Shiftcrypt values from NEF or NMR-STAR data files

    Bio2Byte/nf-b2btools-shiftcrypt’s past year of commit activity
    Python 0 0 0 0 Updated Jan 2, 2025
  • ortholint Public

    A nextflow pipeline that creates (or takes) orthologous groups from gene-called genomes and runs sequence- and structure based QC to remove outliers

    Bio2Byte/ortholint’s past year of commit activity
    Perl 0 MIT 0 0 0 Updated Dec 16, 2024
  • bioenvada Public

    A nextflow pipeline to investigate protein adaption to environmental conditions

    Bio2Byte/bioenvada’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 31, 2024
  • constava Public

    Constava analyzes conformational ensembles calculating conformational state propensities and conformational state variability.

    Bio2Byte/constava’s past year of commit activity
    Python 1 0 0 0 Updated Oct 11, 2024
  • metapredict-mps Public Forked from idptools/metapredict

    A machine learning based protein disorder predictor supporting mps

    Bio2Byte/metapredict-mps’s past year of commit activity
    Python 0 MIT 5 0 1 Updated Aug 22, 2024
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