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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

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  1. toil toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 910 241

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 268 47

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 54 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 29 35

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 26 5

Repositories

Showing 10 of 164 repositories
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 8 Apache-2.0 2 721 18 Updated May 21, 2025
  • meta-disco Public
    DataBiosphere/meta-disco’s past year of commit activity
    Python 1 0 10 0 Updated May 20, 2025
  • duos-ui Public

    Broad Institute Data Use Oversight System

    DataBiosphere/duos-ui’s past year of commit activity
    JavaScript 9 BSD-3-Clause 4 0 4 Updated May 20, 2025
  • consent Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent’s past year of commit activity
    Java 11 BSD-3-Clause 2 0 4 Updated May 20, 2025
  • toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    DataBiosphere/toil’s past year of commit activity
    Python 910 Apache-2.0 241 407 13 Updated May 20, 2025
  • terra-ui Public

    Web user interface for the Terra platform

    DataBiosphere/terra-ui’s past year of commit activity
    TypeScript 54 BSD-3-Clause 21 145 12 Updated May 20, 2025
  • tanagra Public

    Repo for the Tanagra service being developed by the All of Us DRC

    DataBiosphere/tanagra’s past year of commit activity
    Java 2 BSD-3-Clause 1 0 9 Updated May 20, 2025
  • jade-data-repo Public

    The Terra Data Repository built by the Jade team.

    DataBiosphere/jade-data-repo’s past year of commit activity
    Java 13 BSD-3-Clause 5 0 1 Updated May 20, 2025
  • terra-scientific-pipelines-service Public
    DataBiosphere/terra-scientific-pipelines-service’s past year of commit activity
    Java 1 BSD-3-Clause 0 0 0 Updated May 20, 2025
  • consent-ontology Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent-ontology’s past year of commit activity
    Java 7 BSD-3-Clause 0 0 0 Updated May 20, 2025
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