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@Ferg-Lab

Ferguson Lab at the University of Chicago

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  1. DiAMoNDBack DiAMoNDBack Public

    DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces

    Python 19 5

  2. mfGPR mfGPR Public

    Multi-fidelity Gaussian Process Regression

    Python 11 1

  3. LSS LSS Public

    Jupyter Notebook 8 2

  4. pines pines Public

    Permutationally invariant networks for enhanced sampling (PINES)

    C++ 6

  5. Protein_design_mmdVAE_torch Protein_design_mmdVAE_torch Public

    Jupyter Notebook 4

  6. Flow-Back Flow-Back Public

    Forked from mrjoness/Flow-Back

    Generative backmapping of coarse-grained molecular systems using an equivariant graph neural network and flow-matching

    Python 4 2

Repositories

Showing 10 of 19 repositories
  • DiAMoNDBack Public

    DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces

    Ferg-Lab/DiAMoNDBack’s past year of commit activity
    Python 19 5 2 0 Updated May 7, 2025
  • mof-topology-prediction Public
    Ferg-Lab/mof-topology-prediction’s past year of commit activity
    Python 0 1 0 0 Updated Feb 21, 2025
  • Flow-Back Public Forked from mrjoness/Flow-Back

    Generative backmapping of coarse-grained molecular systems using an equivariant graph neural network and flow-matching

    Ferg-Lab/Flow-Back’s past year of commit activity
    Python 4 4 0 0 Updated Nov 5, 2024
  • LSS Public
    Ferg-Lab/LSS’s past year of commit activity
    Jupyter Notebook 8 2 0 0 Updated Oct 7, 2024
  • LSS_BBA Public Forked from mrjoness/LSS_BBA

    Add BBA example to LSS walkthrough

    Ferg-Lab/LSS_BBA’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Aug 6, 2024
  • IMSI_LSS Public Forked from andrewlferguson/IMSI_LSS

    IMSI hands-on workshop: Latent Space Simulators

    Ferg-Lab/IMSI_LSS’s past year of commit activity
    Jupyter Notebook 0 MIT 3 0 0 Updated Apr 29, 2024
  • snrv Public
    Ferg-Lab/snrv’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 1 Updated Apr 5, 2024
  • integrin_molgen Public

    Deep generative modeling of large multi-molecular systems

    Ferg-Lab/integrin_molgen’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 26, 2023
  • dMap_JAX Public

    Diffusion maps using JAX

    Ferg-Lab/dMap_JAX’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 7, 2023
  • Protein_design_mmdVAE_torch Public
    Ferg-Lab/Protein_design_mmdVAE_torch’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Sep 8, 2023
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