Gray Lab
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DL4Proteins-notebooks
DL4Proteins-notebooks PublicColab Notebooks covering deep learning tools for biomolecular structure prediction and design
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- DFMDock Public
DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
Graylab/DFMDock’s past year of commit activity - DL4Proteins-notebooks Public
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
Graylab/DL4Proteins-notebooks’s past year of commit activity - MaskedProteinEnT Public
Graylab/MaskedProteinEnT’s past year of commit activity - MPDock Public
This repository contains the dataset of 29 transmembrane protein complexes of different rigidity along with their unbound protein structure. Additionally, there are scripts to submit relaxing and docking complexes given there unbound monomer structures.
Graylab/MPDock’s past year of commit activity - Implicit-Membrane-Energy-Function-Benchmark Public
This is a set of scientific benchmark tests for evaluating membrane protein modeling energy functions. The test probe an energy function's ability to capture membrane protein orientation, stability, sequence, and structure. The methods are described in detail in the citations below.
Graylab/Implicit-Membrane-Energy-Function-Benchmark’s past year of commit activity
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