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  1. PHATE PHATE Public

    PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

    Python 503 78

  2. MAGIC MAGIC Public

    MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

    Jupyter Notebook 362 96

  3. SAUCIE SAUCIE Public

    Python 99 29

  4. MELD MELD Public

    Quantifying experimental perturbations at single cell resolution

    Python 109 9

  5. Multiscale_PHATE Multiscale_PHATE Public

    Creating multi-resolution embeddings and clusters from high dimensional data

    Jupyter Notebook 53 11

  6. TrajectoryNet TrajectoryNet Public

    TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics

    Jupyter Notebook 116 14

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