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@caravagnalab

Caravagna Lab

The Cancer Data Science Laboratory at the University of Trieste, Italy. PI Giulio Caravagna.

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  1. revolver revolver Public

    REVOLVER - Repeated Evolution in Cancer

    R 65 25

  2. mobster mobster Public

    Model-based subclonal deconvolution from bulk sequencing.

    HTML 33 8

  3. CNAqc CNAqc Public

    CNAqc - Copy Number Alteration (CNA) Quality Check package

    R 19 8

  4. TINC TINC Public

    Tumour-in-Normal Contamination assessment with evolutionary theory.

    R 5 2

  5. VIBER VIBER Public

    VIBER - Variational Binomial Mixtures

    HTML 2 2

Repositories

Showing 10 of 36 repositories
  • tumourevo Public Forked from nf-core/tumourevo

    Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)

    caravagnalab/tumourevo’s past year of commit activity
    0 GPL-3.0 5 0 0 Updated Jan 29, 2025
  • DeConveil Public Forked from Katerina10-cloud/DeConveil

    Extension of Differential Gene Expression testing to handle genome aneuploidy in cancer

    caravagnalab/DeConveil’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jan 28, 2025
  • tickTack Public

    Timing Inference for Copy number alterations: Tracking Alterations in Cancer Karyotypes

    caravagnalab/tickTack’s past year of commit activity
    R 0 0 0 0 Updated Jan 27, 2025
  • rRACES-examples Public
    caravagnalab/rRACES-examples’s past year of commit activity
    HTML 0 0 1 0 Updated Jan 15, 2025
  • rRACES Public

    R wrapper for the RACES package

    caravagnalab/rRACES’s past year of commit activity
    C++ 2 GPL-3.0 1 6 0 Updated Jan 15, 2025
  • lineaGT Public

    Lineage inference from Gene Therapy assays with insertional mutagenesis and somatic mutations

    caravagnalab/lineaGT’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Jan 9, 2025
  • pylineaGT Public

    A Pyro model to perform lineage inference from Gene Therapy assays

    caravagnalab/pylineaGT’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jan 9, 2025
  • mobster Public

    Model-based subclonal deconvolution from bulk sequencing.

    caravagnalab/mobster’s past year of commit activity
    HTML 33 GPL-3.0 8 1 0 Updated Dec 30, 2024
  • devil Public

    devil

    caravagnalab/devil’s past year of commit activity
    C++ 2 1 0 0 Updated Dec 10, 2024
  • biPOD Public

    Bayesian inference for population dynamics

    caravagnalab/biPOD’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Nov 28, 2024
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