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1. CellWhisperer CellWhisperer Public

   CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets

   Jupyter Notebook 49 7

2. MrBiomics MrBiomics Public

   MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses

   Python 43 1

3. atacseq_pipeline atacseq_pipeline Public

   Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.

   Python 49 2

4. KPNN KPNN Public

   Knowledge-primed neural networks

   Python 35 8

5. enrichment_analysis enrichment_analysis Public

   A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

   Python 32 2

6. crop-seq crop-seq Public archive

   Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)

   Python 30 13