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  1. northstar northstar Public

    Single cell type annotation guided by cell atlases, with freedom to be queer

    Python 25 6

  2. cell_atlas_approximations cell_atlas_approximations Public

    This is an umbrella repo describing cell atlas approximations

    2

  3. northstar_analysis northstar_analysis Public

    Forked from iosonofabio/northstar_analysis

    Jupyter notebooks and scripts to perform atlas-based scRNA-seq analysis using Northstar

    Jupyter Notebook 1

  4. atlas_landmarks atlas_landmarks Public

    Forked from iosonofabio/atlas_landmarks

    Single cell gene expression data, averaged or subsampled by cell type

    Python

  5. data-compression-and-APIs-for-cell-atlases data-compression-and-APIs-for-cell-atlases Public

    Forked from YingX97/data-compression-and-APIs-for-cell-atlases

    Jupyter Notebook

  6. treasuremap treasuremap Public

    Treasuremap is a variation of UMAP that embeds a network with some fixed nodes.

    Python

Repositories

Showing 10 of 18 repositories
  • iplotx Public

    Plotting networks from igraph and networkx

    fabilab/iplotx’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 21, 2025
  • cell_atlas_approximations_HI Public

    Human interface for cell atlas approximations

    fabilab/cell_atlas_approximations_HI’s past year of commit activity
    JavaScript 0 1 4 2 Updated Apr 28, 2025
  • cell_atlas_approximations_disease_API Public

    APIs for atlas approximations on human disease

    fabilab/cell_atlas_approximations_disease_API’s past year of commit activity
    Jupyter Notebook 0 1 1 0 Updated Apr 2, 2025
  • cell_atlas_approximations_analysis Public

    Analysis of cell atlas approximations across organs and organisms.

    fabilab/cell_atlas_approximations_analysis’s past year of commit activity
    Python 0 0 0 0 Updated Mar 27, 2025
  • SATURN-xfer Public
    fabilab/SATURN-xfer’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 19, 2025
  • cell_atlas_approximations_NLP Public

    Natural language processor for cell atlas approximations

    fabilab/cell_atlas_approximations_NLP’s past year of commit activity
    JavaScript 0 0 4 0 Updated Mar 4, 2025
  • cell_atlas_approximations Public

    This is an umbrella repo describing cell atlas approximations

    fabilab/cell_atlas_approximations’s past year of commit activity
    2 0 0 0 Updated Feb 28, 2025
  • cell_atlas_approximations_API Public

    APIs for cell atlas approximations

    fabilab/cell_atlas_approximations_API’s past year of commit activity
    HTML 0 MIT 2 7 3 Updated Feb 28, 2025
  • cell_atlas_approximations_compression Public

    Compression for cell atlas approximations

    fabilab/cell_atlas_approximations_compression’s past year of commit activity
    Python 0 MIT 2 9 0 Updated Feb 17, 2025
  • scquill Public

    Approximate any single cell data set, saving >99% of memory and runtime.

    fabilab/scquill’s past year of commit activity
    Python 0 MIT 1 2 0 Updated Dec 17, 2024

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