epimutacions

epimutacions is an R/Biconductor package. The package provides 6 statistical methods for outlier detection in DNA methylation data. It also contains function for results visualization and annotation.

Installation

The epimutacions package can be installed using the following code:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epimutacions")

The epimutacions package depends on epimutacionsData
package which can be installed as following:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epimutacionsData")

Usage

• See vignette: shorturl.at/gwFOQ

Acknowledgements

This project is funded by la Fundació de la Marató de TV3 within the project iGenCO (Grant number 504/C/2020).

The authors would like to thank the team who collaborated in the initial design of the package in the European BioHackathon 2020: Lordstrong Akano, James Baye, Alejandro Caceres, Pavlo Hrab, Raquel Manzano and Margherita Mutarelli.

The authors also want to thank the organization of European BioHackathon 2020 for its support.

Contact

• Dolors Pelegri-Siso: dolors.pelegri@isglobal.org
• Juan R. Gonzalez: juanr.gonzalez@isglobal.org
• Carlos Ruiz-Arenas: carlos.ruiza@upf.edu
• Carles Hernandez-Ferrer: carles.hernandez@cnag.crg.eu