Skip to content
@saeyslab

Saeys Lab

Data Mining and Modelling for Biomedicine, a VIB-UGent research unit

Pinned Loading

  1. nichenetr nichenetr Public

    NicheNet: predict active ligand-target links between interacting cells

    R 538 125

  2. FlowSOM FlowSOM Public

    Using self-organizing maps for visualization and interpretation of cytometry data

    R 27 8

  3. multinichenetr multinichenetr Public

    MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

    HTML 146 17

  4. PeacoQC PeacoQC Public

    Peak-based selection of high quality cytometry data

    R 16 9

  5. spotless-benchmark spotless-benchmark Public

    A repository for benchmarking spatial deconvolution and mapping tools

    R 33 4

  6. CytoNorm CytoNorm Public

    R library to normalize cytometry data

    R 36 11

Repositories

Showing 10 of 61 repositories
  • harpy Public

    Single-cell spatial proteomics analysis that makes you happy!

    saeyslab/harpy’s past year of commit activity
    Python 27 5 13 3 Updated May 20, 2025
  • nichenetr Public

    NicheNet: predict active ligand-target links between interacting cells

    saeyslab/nichenetr’s past year of commit activity
    R 538 125 22 3 Updated May 20, 2025
  • FlowSOM_Python Public

    The complete FlowSOM package known from R, now available in Python!

    saeyslab/FlowSOM_Python’s past year of commit activity
    Python 20 GPL-3.0 5 2 1 Updated May 19, 2025
  • SingleBench Public

    Evaluation framework for exploratory modelling in cytometry

    saeyslab/SingleBench’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 16, 2025
  • ViVAE Public

    Single-cell dimensionality reduction toolkit

    saeyslab/ViVAE’s past year of commit activity
    Jupyter Notebook 5 Apache-2.0 1 0 0 Updated May 15, 2025
  • PeacoQC Public

    Peak-based selection of high quality cytometry data

    saeyslab/PeacoQC’s past year of commit activity
    R 16 9 3 0 Updated May 13, 2025
  • spotless-benchmark Public

    A repository for benchmarking spatial deconvolution and mapping tools

    saeyslab/spotless-benchmark’s past year of commit activity
    R 33 MIT 4 0 0 Updated May 13, 2025
  • ViScore Public

    Single-cell dimensionality reduction evaluation and benchmarking toolkit

    saeyslab/ViScore’s past year of commit activity
    Python 6 Apache-2.0 0 1 0 Updated May 6, 2025
  • saeyslab/napari-sparrow’s past year of commit activity
    Python 27 0 12 0 Updated May 6, 2025
  • iidx Public

    Interactive and interpretable differential expression modelling in cytometry

    saeyslab/iidx’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Apr 26, 2025

Top languages

Loading…

Most used topics

Loading…

pFad - Phonifier reborn

Pfad - The Proxy pFad of © 2024 Garber Painting. All rights reserved.

Note: This service is not intended for secure transactions such as banking, social media, email, or purchasing. Use at your own risk. We assume no liability whatsoever for broken pages.


Alternative Proxies:

Alternative Proxy

pFad Proxy

pFad v3 Proxy

pFad v4 Proxy