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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 415 46

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 249 36

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 151 27

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 149 51

  5. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

  6. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 94 28

Repositories

Showing 10 of 184 repositories
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 48 GPL-3.0 22 25 6 Updated May 21, 2025
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 149 BSD-3-Clause 51 83 7 Updated May 19, 2025
  • kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    seung-lab/kimimaro’s past year of commit activity
    C++ 151 GPL-3.0 27 15 0 Updated May 16, 2025
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 23 Apache-2.0 330 91 37 Updated May 12, 2025
  • osteoid Public

    Skeleton object used for representing neurons, adjacent cells, and organelles.

    seung-lab/osteoid’s past year of commit activity
    Python 1 BSD-3-Clause 1 1 1 Updated May 8, 2025
  • fastremap Public

    Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

    seung-lab/fastremap’s past year of commit activity
    C++ 56 LGPL-3.0 6 0 0 Updated May 8, 2025
  • microviewer Public

    Multiplatform 3D numpy image browser based viewer with voxel painting.

    seung-lab/microviewer’s past year of commit activity
    JavaScript 14 LGPL-2.1 1 5 0 Updated May 8, 2025
  • chunkflow Public

    Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

    seung-lab/chunkflow’s past year of commit activity
    Python 52 Apache-2.0 8 14 1 Updated May 8, 2025
  • ng-extend Public
    seung-lab/ng-extend’s past year of commit activity
    Vue 5 8 3 27 Updated May 2, 2025
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    seung-lab/cloud-files’s past year of commit activity
    Python 42 BSD-3-Clause 8 14 0 Updated Apr 30, 2025

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