Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.

Pipeline for testing drug response prediction models in a statistically and biologically sound way.

Communitiy-based Cell Line Ontology

Breast Cancer Single Cell Atlas

A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research

Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.

Sobolev alignment of deep probabilistic models for comparing single cell profiles

COSMIC数据库全部细胞系内容

Multi-tasking (drug response, cell line classification, etc.) Uno Implemented in PyTorch.

Python implementation of TRANSACT, a tool to transfer non-linear predictors of drug response from model systems to tumors.

This repository contains code for MFmap (model fidelity map), a semi-supervised generative model integrating gene expression, copy number and mutation data, matching cell lines to cancer subtypes. MFmap compresses high dimensional omics data of cell lines and bulk tumours into subtype informative low dimensional latent representations and predic…

Code for the article "Disruption of cancer cell functions by task-specific drug perturbations"

The repo of the "Multi-omics alleviates the limitations of panel-sequencing for cancer drug response prediction" manuscript

Differential expression analysis of CAMA-1 cells in the context of ribociclib resistance and facilitation.

TNTurnerLab Code for Revio Neuro-2a paper

Cell Line Authentication from ChIP-seq data