Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
-
Updated
Apr 18, 2025 - Python
#
cis-regulatory-elements
Here are 7 public repositories matching this topic...
Deep learning the cis-regulatory code for gene expression in selected model plants
-
Updated
Mar 15, 2024 - R
Crosstalk between codon optimality and 3' UTR cis-elements dictates mRNA stability
bioinformatics genomics paper gene-regulation biological-data-analysis mrna-stability codon-optimality cis-regulatory-elements
-
Updated
Dec 19, 2021 - Jupyter Notebook
This repository contains custom code used for analysis in El Ghamrasni et al.,
-
Updated
Apr 26, 2021 - R
Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data
-
Updated
Apr 5, 2021 - Dockerfile
This project contains code used in my work on predicting gene expression from cis-regulatory sequences
-
Updated
Oct 12, 2023 - R
Workflow to identify functional cis-regulatory regions for each annotated cell type
deep-learning hi-c promoters enhancers single-cell-rna-seq single-cell-atac-seq cross-species shap single-cell-methylation single-cell-multiomics cis-regulatory-elements
-
Updated
Apr 17, 2024 - Python
Improve this page
Add a description, image, and links to the cis-regulatory-elements topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the cis-regulatory-elements topic, visit your repo's landing page and select "manage topics."