LLM-based ontological extraction tools, including SPIRES
Linked Open Data Modeling Language
Schema and generated objects for biolink data model and upper ontology
Simple Standard for Sharing Ontology Mappings
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions…
Python toolkit for SSSOM mapping format
Link Modeling Language (LinkML) model
Data transformation framework for LinkML data models
Automated assistance for the schema development lifecycle
SQL and SQLite builds of OWL ontologies
Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
Runtime support for linkml generated models
National Microbiome Data Collaborative (NMDC) unified data model
A knowledge extraction tool that uses a large language model to extract semantic information from text
wrapper for multiple linkml storage engines
Tools for working with KGCL
Data ingest application for Monarch Initiative knowledge graph using Koza
Datamodel for KGCL (Knowledge Graph Change Language)
Add a description, image, and links to the linkml topic page so that developers can more easily learn about it.
To associate your repository with the linkml topic, visit your repo's landing page and select "manage topics."