MERlin is an extensible analysis pipeline applied to decoding MERFISH data
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Sep 21, 2021 - Python
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merfish
Here are 8 public repositories matching this topic...
A Julia package for single cell and spatial data analysis
bioinformatics data-viz scrna-seq starmap julia-package single-cell-omics spatial-transcriptomics scatac-seq merfish visium seqfish xenium cartana slideseq
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Dec 16, 2024 - Julia
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
scrna-seq scrna-seq-data scrnaseq nico scrna-seq-analysis spatial-transcriptomics niche-modelling merfish seqfish niche-covariation
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Jan 8, 2025 - Jupyter Notebook
GPU accelerated post-processing for 2D or 3D iterative barcoded FISH data.
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Jan 27, 2025 - Python
Single cell ATAC and RNA seq data analysis
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Jan 9, 2025 - Jupyter Notebook
First step of data wrangling in MERFISH data project
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Jun 12, 2024 - Python
A snakemake pipeline to perform cell segmentation on MERFISH spatial transcriptomics data.
cell-segmentation watershed-algorithm single-cell-rna-seq spatial-transcriptomics merfish cellpose vizgen vizgen-postprocessing
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Nov 22, 2023 - Python
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