reciprocal-blast-hits

Here are 4 public repositories matching this topic...

vinuesa / TIB-filoinfo

Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México

bioinformatics tutorials linux-shell phylogenetics model-selection blast maximum-likelihood phylogenomics bioinformatics-scripts bash-scripting pangenomics multiple-sequence-alignment reciprocal-blast-hits

Updated Dec 14, 2024
Shell

JJChenCharly / OrthoSLC

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OrthoSLC: A pipeline to get Orthologous Genes using Reciprocal Best Blast Hit (RBBH) Single Linkage Clustering, indenpendent of relational database management system

lightweight bioinformatics genomics jupyter-notebook large-scale single-linkage-clustering large-dataset pan-genome core-genome dereplication pre-compiled reciprocal-blast-hits microbe-subspecies independent-of-mysql cpp-callable-binary convenient-installation

Updated Jan 23, 2025
Jupyter Notebook

ahishsujay / Find_Orthologs

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Python script for carrying out reciprocal BLAST hits

blast reciprocal-blast-hits

Updated Mar 22, 2020
Python

kullrich / CRBHits

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[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.

bioinformatics r r-package synteny dnds-estimation joss last pairwise-comparison dnds reciprocal-blast-hits kaks

Updated Nov 8, 2024
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reciprocal-blast-hits

Here are 4 public repositories matching this topic...

vinuesa / TIB-filoinfo

JJChenCharly / OrthoSLC

ahishsujay / Find_Orthologs

kullrich / CRBHits

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