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scrna-pipeline

Here are 5 public repositories matching this topic...

zhanghao-njmu / SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

scrna-seq shiny-apps single-cell shinyapps single-cell-genomics single-cell-rna-seq single-cell-analysis single-cell-atac-seq seurat single-cell-omics scrna-seq-analysis single-cell-sequencing shiny-app scanpy scatac-seq anndata scrna-pipeline seurat-objects single-cell-pipeline

Updated May 21, 2024
R

AntonioDeFalco / SCEVAN

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

scrna-seq single-cell copy-number-variation copynumber tumor-evolution tumor-heterogeneity aneuploidy scrna-seq-analysis subclone-identification tumor-classification clonal-evolution scrna-pipeline subclonal-deconvolution microenvironment clonal-analysis

Updated Apr 1, 2025
HTML

mckellardw / scMuscle

The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data

scrna-seq-data scrna-seq-analysis scrna-pipeline

Updated Nov 30, 2022
HTML

luglilab / NaCl-enhances-CD8-T-cell-effector-functions-in-cancer-immunotherapy

Integration analysis with Scanpy and scRNAseq TME from blueprint

tutorial scrnaseq scrna-seq-analysis scanpy scrna-pipeline

Updated Jul 6, 2024
Jupyter Notebook

scRNASeq

OlivierRaineteauSBRI / scRNASeq

Repo linked to our recent publication in Science Advances

scrna-seq spatial-analysis spatial-data transcriptomics brain spatial-data-analysis scrna-seq-data seurat scrna-seq-analysis spatial-transcriptomics visium scrna-pipeline scrnaseq-data scrnaseq-datasets seurat-objects biology-project

Updated Jan 31, 2024
HTML

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