Software for predicting library complexity and genome coverage in high-throughput sequencing.
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
Calculate fastq reads and sequencing coverage
An R package for estimating library complexity
Detection and correction of sequencing errors in protein coding regions of whole genome draft sequences
TrIdent- Transduction Identification: Automatic detection, classification and characterization of active transduction events in microbiomes.
Analyze Whole Genome Bi-Sulfite Sequencing for Grape evolution in response to grafting
Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes
This is a pipeline for analyzing next-generation sequencing results. An aligned sequence in a BAM file is compared to a reference fasta file in order to assess depth of coverage as well as assist in determining single nucleotide variants and calculating Shannon entropy of the genome.
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